hiram: changes by file

review to branch (2009-07-27 to 2009-08-04) v212

• src/hg/makeDb/doc/ce6.txt
  • 1.17 lines changed: 14, context: html, text, full: html, text
    5-way alignments done on ce7 and ce8, liftOvers done for ce6 to ce7 and ce7 to ce8
• src/hg/makeDb/doc/ce7.txt
  • 1.3 lines changed: 171, context: html, text, full: html, text
    5-way alignments done on ce7 and ce8, liftOvers done for ce6 to ce7 and ce7 to ce8
• src/hg/makeDb/doc/ce8.txt
  • 1.2 lines changed: 357, context: html, text, full: html, text
    5-way alignments done on ce7 and ce8, liftOvers done for ce6 to ce7 and ce7 to ce8
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.45 lines changed: 7, context: html, text, full: html, text
    loxAfr2 has become loxAfr3
• src/hg/makeDb/trackDb/mouseLemur/micMur1/description.html
  • 1.2 lines changed: 6, context: html, text, full: html, text
    Add links to Broad FTP site, and photo dimensions
• src/hg/makeDb/trackDb/treeShrew/tupBel1/description.html
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Correct comment about sequencing center
• src/hg/makeDb/trackDb/worm/trackDb.ra
  • 1.36 lines changed: 126, context: html, text, full: html, text
    Combining chains and nets into single composite tracks
• src/hg/utils/automation/makeDownloads.pl
  • 1.24 lines changed: 1, context: html, text, full: html, text
    No need to explicitly mention liftOver binary in makeDownloads README business, and better warning messages in makePushQSql.pl and move one genbank to optional list
  • 1.23 lines changed: 17, context: html, text, full: html, text
    Add 2bit file to bigZips, and checking bed/repeatMasker/ directory for the fa.out file
• src/hg/utils/automation/makePushQSql.pl
  • 1.26 lines changed: 13, context: html, text, full: html, text
    No need to explicitly mention liftOver binary in makeDownloads README business, and better warning messages in makePushQSql.pl and move one genbank to optional list