hiram: changes by commit

review to branch (2009-07-27 to 2009-08-04) v212

• 5-way alignments done on ce7 and ce8, liftOvers done for ce6 to ce7 and ce7 to ce8
  • src/hg/makeDb/doc/ce6.txt 1.17 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/doc/ce7.txt 1.3 - lines changed: 171, context: html, text, full: html, text
  • src/hg/makeDb/doc/ce8.txt 1.2 - lines changed: 357, context: html, text, full: html, text
• Combining chains and nets into single composite tracks
  • src/hg/makeDb/trackDb/worm/trackDb.ra 1.36 - lines changed: 126, context: html, text, full: html, text
• Add 2bit file to bigZips, and checking bed/repeatMasker/ directory for the fa.out file
  • src/hg/utils/automation/makeDownloads.pl 1.23 - lines changed: 17, context: html, text, full: html, text
• No need to explicitly mention liftOver binary in makeDownloads README business, and better warning messages in makePushQSql.pl and move one genbank to optional list
  • src/hg/utils/automation/makeDownloads.pl 1.24 - lines changed: 1, context: html, text, full: html, text
  • src/hg/utils/automation/makePushQSql.pl 1.26 - lines changed: 13, context: html, text, full: html, text
• loxAfr2 has become loxAfr3
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.45 - lines changed: 7, context: html, text, full: html, text
• Add links to Broad FTP site, and photo dimensions
  • src/hg/makeDb/trackDb/mouseLemur/micMur1/description.html 1.2 - lines changed: 6, context: html, text, full: html, text
• Correct comment about sequencing center
  • src/hg/makeDb/trackDb/treeShrew/tupBel1/description.html 1.2 - lines changed: 1, context: html, text, full: html, text