hiram: changes by file

branch to review (2009-07-21 to 2009-07-27) v211

• src/hg/lib/liftOver.c
  • 1.45 lines changed: 1, context: html, text, full: html, text
    Restore a chainFree() to eliminate a memory leak
• src/hg/makeDb/doc/caeJap2.txt
  • 1.2 lines changed: 189, context: html, text, full: html, text
    Now running genbank
  • 1.1 lines changed: 163, context: html, text, full: html, text
    Initial sequence through masking
• src/hg/makeDb/doc/ce7.txt
  • 1.2 lines changed: 151, context: html, text, full: html, text
    lastz runs done for caePb2, caeRem3, cb3, caeJap2
  • 1.1 lines changed: 217, context: html, text, full: html, text
    Through genome build and first lastz of caePb2
• src/hg/makeDb/doc/ce8.txt
  • 1.1 lines changed: 167, context: html, text, full: html, text
    Initial build through repeat masking and kluster scratch data populating
• src/hg/makeDb/doc/hg19.txt
  • 1.32 lines changed: 1, context: html, text, full: html, text
    testing commit from outside UCSC
• src/hg/makeDb/doc/loxAfr3.txt
  • 1.1 lines changed: 143, context: html, text, full: html, text
    Initial file, through genbank run
• src/hg/makeDb/doc/sacCer2.txt
  • 1.14 lines changed: 10, context: html, text, full: html, text
    Add indexes for chrM_gold and chrM_gap
• src/hg/makeDb/genbank/etc/align.dbs
  • 1.98 lines changed: 1, context: html, text, full: html, text
    Added loxAfr3 - Loxodonta africana
• src/hg/makeDb/genbank/etc/genbank.conf
  • 1.343 lines changed: 19, context: html, text, full: html, text
    Added caeJap2
  • 1.342 lines changed: 17, context: html, text, full: html, text
    Adding loxAfr3
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • 1.103 lines changed: 1, context: html, text, full: html, text
    Added loxAfr3 - Loxodonta africana
• src/hg/makeDb/trackDb/makefile
  • 1.273 lines changed: 1, context: html, text, full: html, text
    Adding ce8 to the build
  • 1.272 lines changed: 2, context: html, text, full: html, text
    Adding caeJap2 to the build
• src/hg/makeDb/trackDb/worm/trackDb.ra
  • 1.35 lines changed: 43, context: html, text, full: html, text
    Adding chainNet composite for caePb2
  • 1.34 lines changed: 38, context: html, text, full: html, text
    Adding ce7ChainNet
• src/utils/makefile
  • 1.73 lines changed: 2, context: html, text, full: html, text
    add to build fastqToFa and faToFastq