hiram: changes by commit

branch to review (2009-07-21 to 2009-07-27) v211

• Adding loxAfr3
  • src/hg/makeDb/genbank/etc/genbank.conf 1.342 - lines changed: 17, context: html, text, full: html, text
• Added loxAfr3 - Loxodonta africana
  • src/hg/makeDb/genbank/etc/align.dbs 1.98 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs 1.103 - lines changed: 1, context: html, text, full: html, text
• Initial file, through genbank run
  • src/hg/makeDb/doc/loxAfr3.txt 1.1 - lines changed: 143, context: html, text, full: html, text
• add to build fastqToFa and faToFastq
  • src/utils/makefile 1.73 - lines changed: 2, context: html, text, full: html, text
• Add indexes for chrM_gold and chrM_gap
  • src/hg/makeDb/doc/sacCer2.txt 1.14 - lines changed: 10, context: html, text, full: html, text
• testing commit from outside UCSC
  • src/hg/makeDb/doc/hg19.txt 1.32 - lines changed: 1, context: html, text, full: html, text
• Adding caeJap2 to the build
  • src/hg/makeDb/trackDb/makefile 1.272 - lines changed: 2, context: html, text, full: html, text
• Initial sequence through masking
  • src/hg/makeDb/doc/caeJap2.txt 1.1 - lines changed: 163, context: html, text, full: html, text
• Added caeJap2
  • src/hg/makeDb/genbank/etc/genbank.conf 1.343 - lines changed: 19, context: html, text, full: html, text
• Through genome build and first lastz of caePb2
  • src/hg/makeDb/doc/ce7.txt 1.1 - lines changed: 217, context: html, text, full: html, text
• Adding ce7ChainNet
  • src/hg/makeDb/trackDb/worm/trackDb.ra 1.34 - lines changed: 38, context: html, text, full: html, text
• Adding chainNet composite for caePb2
  • src/hg/makeDb/trackDb/worm/trackDb.ra 1.35 - lines changed: 43, context: html, text, full: html, text
• Now running genbank
  • src/hg/makeDb/doc/caeJap2.txt 1.2 - lines changed: 189, context: html, text, full: html, text
• Restore a chainFree() to eliminate a memory leak
  • src/hg/lib/liftOver.c 1.45 - lines changed: 1, context: html, text, full: html, text
• lastz runs done for caePb2, caeRem3, cb3, caeJap2
  • src/hg/makeDb/doc/ce7.txt 1.2 - lines changed: 151, context: html, text, full: html, text
• Adding ce8 to the build
  • src/hg/makeDb/trackDb/makefile 1.273 - lines changed: 1, context: html, text, full: html, text
• Initial build through repeat masking and kluster scratch data populating
  • src/hg/makeDb/doc/ce8.txt 1.1 - lines changed: 167, context: html, text, full: html, text