hiram: changes by file

review to branch (2009-08-10 to 2009-08-18) v213

• src/hg/makeDb/doc/hg19.txt
  • 1.35 lines changed: 212, context: html, text, full: html, text
    done with hg19 tetNig2 chain and net
• src/hg/makeDb/doc/oryCun2.txt
  • 1.1 lines changed: 167, context: html, text, full: html, text
    Initial browser built, running repeat masker and simple repeats
• src/hg/makeDb/doc/tetNig2.txt
  • 1.5 lines changed: 181, context: html, text, full: html, text
    done with hg19 tetNig2 chain and net
• src/hg/makeDb/genbank/etc/align.dbs
  • 1.99 lines changed: 1, context: html, text, full: html, text
    Added tetNig2 - Tetraodon Nigirividis
• src/hg/makeDb/genbank/etc/genbank.conf
  • 1.347 lines changed: 8, context: html, text, full: html, text
    Adding automatic upstream file creation for ornAna1, fr2, gasAcu1, oryLat2
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • 1.104 lines changed: 1, context: html, text, full: html, text
    Added tetNig2 - Tetraodon Nigirividis
• src/hg/makeDb/schema/all.joiner
  • 1.731 lines changed: 6, context: html, text, full: html, text
    Adding tetNig2 and oryCun2
• src/hg/makeDb/trackDb/makefile
  • 1.275 lines changed: 1, context: html, text, full: html, text
    Adding oryCun2 to the build
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.524 lines changed: 39, context: html, text, full: html, text
    Adding tetNig2 chain and net composite
• src/hg/utils/automation/blastz-run-ucsc
  • 1.11 lines changed: 2, context: html, text, full: html, text
    Proper reference to /bin/ls instead of just ls in a system() call to avoid PATH searching