hiram: changes by commit

review to branch (2009-08-10 to 2009-08-18) v213

• Adding tetNig2 chain and net composite
  • src/hg/makeDb/trackDb/trackDb.ra 1.524 - lines changed: 39, context: html, text, full: html, text
• Added tetNig2 - Tetraodon Nigirividis
  • src/hg/makeDb/genbank/etc/align.dbs 1.99 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs 1.104 - lines changed: 1, context: html, text, full: html, text
• done with hg19 tetNig2 chain and net
  • src/hg/makeDb/doc/hg19.txt 1.35 - lines changed: 212, context: html, text, full: html, text
  • src/hg/makeDb/doc/tetNig2.txt 1.5 - lines changed: 181, context: html, text, full: html, text
• Initial browser built, running repeat masker and simple repeats
  • src/hg/makeDb/doc/oryCun2.txt 1.1 - lines changed: 167, context: html, text, full: html, text
• Adding oryCun2 to the build
  • src/hg/makeDb/trackDb/makefile 1.275 - lines changed: 1, context: html, text, full: html, text
• Adding tetNig2 and oryCun2
  • src/hg/makeDb/schema/all.joiner 1.731 - lines changed: 6, context: html, text, full: html, text
• Adding automatic upstream file creation for ornAna1, fr2, gasAcu1, oryLat2
  • src/hg/makeDb/genbank/etc/genbank.conf 1.347 - lines changed: 8, context: html, text, full: html, text
• Proper reference to /bin/ls instead of just ls in a system() call to avoid PATH searching
  • src/hg/utils/automation/blastz-run-ucsc 1.11 - lines changed: 2, context: html, text, full: html, text