kent: changes by commit

review to branch (2009-08-10 to 2009-08-18) v213

• Moving some functions from bedGraphToBigBed to library.
  • src/inc/bbiFile.h 1.13 - lines changed: 7, context: html, text, full: html, text
  • src/lib/bbiWrite.c 1.4 - lines changed: 72, context: html, text, full: html, text
  • src/lib/bigBed.c 1.20 - lines changed: 2, context: html, text, full: html, text
• Bumping up default itemsPerSlot for better efficiency.
  • src/utils/bedToBigBed/bedToBigBed.c 1.7 - lines changed: 1, context: html, text, full: html, text
• Removing unused include file.
  • src/utils/bigWigToBedGraph/bigWigToBedGraph.c 1.4 - lines changed: 1, context: html, text, full: html, text
• Adding docs on bigBed/bigWig types.
  • src/hg/makeDb/trackDb/README 1.86 - lines changed: 10, context: html, text, full: html, text
• Making it handle 3 column beds better.
  • src/utils/bigBedToBed/bigBedToBed.c 1.6 - lines changed: 6, context: html, text, full: html, text
• Fixing bug in coverage calcs.
  • src/lib/bbiRead.c 1.12 - lines changed: 5, context: html, text, full: html, text