braney: changes by file

branch to review (2009-08-18 to 2009-08-25) v213

• src/hg/encode/validateFiles/validateFiles.c
  • 1.26 lines changed: 15, context: html, text, full: html, text
    add matchFirst argument
• src/hg/hgTracks/mafTrack.h
  • 1.8 lines changed: 1, context: html, text, full: html, text
    change summary view to start after 50K rather than 1mb.
• src/hg/lib/hui.c
  • 1.231 lines changed: 4, context: html, text, full: html, text
    cgi encode controlled vocabulary terms
• src/hg/lib/wiggleUtils.c
  • 1.54 lines changed: 1, context: html, text, full: html, text
    add comment
  • 1.53 lines changed: 23, context: html, text, full: html, text
    take out slow query to find all spans and replace with code to look for first span
  • 1.52 lines changed: 2, context: html, text, full: html, text
    take out "first" change cuz I stupid
  • 1.51 lines changed: 4, context: html, text, full: html, text
    if no spanList is specified in trackDb, build list by choosing first span in the table rather than trying to find all the spans. This is the same behavior as adding "spanList first" to the trackDb for over 500 tables.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.497 lines changed: 2, context: html, text, full: html, text
    make min and max on HA CNV track integers
  • 1.496 lines changed: 1, context: html, text, full: html, text
    add noScoreFilter to CNV tracks
  • 1.495 lines changed: 2, context: html, text, full: html, text
    set minLimit and maxLimit
  • 1.494 lines changed: 1, context: html, text, full: html, text
    change back HA CNV to bed 9 to get back colors and labels (D'oh!)
  • 1.493 lines changed: 1, context: html, text, full: html, text
    change HudsonalphaCnv top level to bed3 to disable score filtering
  • 1.492 lines changed: 33, context: html, text, full: html, text
    testing some things
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html
  • 1.10 lines changed: 1, context: html, text, full: html, text
    a little text that Katrina wanted
  • 1.8 lines changed: 15, context: html, text, full: html, text
    some fix-ups requested by Katrina