braney: changes by commit

branch to review (2009-08-18 to 2009-08-25) v213

• add matchFirst argument
  • src/hg/encode/validateFiles/validateFiles.c 1.26 - lines changed: 15, context: html, text, full: html, text
• cgi encode controlled vocabulary terms
  • src/hg/lib/hui.c 1.231 - lines changed: 4, context: html, text, full: html, text
• change summary view to start after 50K rather than 1mb.
  • src/hg/hgTracks/mafTrack.h 1.8 - lines changed: 1, context: html, text, full: html, text
• if no spanList is specified in trackDb, build list by choosing first span in the table rather than trying to find all the spans. This is the same behavior as adding "spanList first" to the trackDb for over 500 tables.
  • src/hg/lib/wiggleUtils.c 1.51 - lines changed: 4, context: html, text, full: html, text
• testing some things
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.492 - lines changed: 33, context: html, text, full: html, text
• change HudsonalphaCnv top level to bed3 to disable score filtering
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.493 - lines changed: 1, context: html, text, full: html, text
• take out "first" change cuz I stupid
  • src/hg/lib/wiggleUtils.c 1.52 - lines changed: 2, context: html, text, full: html, text
• some fix-ups requested by Katrina
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html 1.8 - lines changed: 15, context: html, text, full: html, text
• change back HA CNV to bed 9 to get back colors and labels (D'oh!)
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.494 - lines changed: 1, context: html, text, full: html, text
• set minLimit and maxLimit
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.495 - lines changed: 2, context: html, text, full: html, text
• take out slow query to find all spans and replace with code to look for first span
  • src/hg/lib/wiggleUtils.c 1.53 - lines changed: 23, context: html, text, full: html, text
• add comment
  • src/hg/lib/wiggleUtils.c 1.54 - lines changed: 1, context: html, text, full: html, text
• add noScoreFilter to CNV tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.496 - lines changed: 1, context: html, text, full: html, text
• a little text that Katrina wanted
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html 1.10 - lines changed: 1, context: html, text, full: html, text
• make min and max on HA CNV track integers
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.497 - lines changed: 2, context: html, text, full: html, text