jsanborn: changes by file

review to branch (2009-09-09 to 2009-09-15) v215

• src/hg/instinct/hgHeatmap2/drawingCode.c
  • 1.71 lines changed: 6, context: html, text, full: html, text
    fixed off-by-one error in heatmap display
• src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.TCGAcontrol.ra
  • 1.18 lines changed: 20, context: html, text, full: html, text
    added gbm vs norm affy
• src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra
  • 1.88 lines changed: 4, context: html, text, full: html, text
    added gbm vs norm affy
  • 1.87 lines changed: 11, context: html, text, full: html, text
    updated harvard cgh dataset
• src/hg/makeDb/trackDb/human/hg18/trackDb.tcga1.ra
  • 1.20 lines changed: 1, context: html, text, full: html, text
    added logicalDb line to mskcc1x1m
• src/hg/tcga/bamFilter/bamFilter.c
  • 1.4 lines changed: 32, context: html, text, full: html, text
    proper bed reading
  • 1.3 lines changed: 11, context: html, text, full: html, text
    added quality filter
  • 1.2 lines changed: 39, context: html, text, full: html, text
    updated
  • 1.1 lines changed: 201, context: html, text, full: html, text
    initial commit
• src/hg/tcga/bamFilter/makefile
  • 1.1 lines changed: 23, context: html, text, full: html, text
    initial commit
• src/hg/tcga/scripts/DataTypes.py
  • 1.7 lines changed: 57, context: html, text, full: html, text
    fixed a few bugs
• src/hg/tcga/scripts/GenericDataType.py
  • 1.7 lines changed: 6, context: html, text, full: html, text
    fixed a few bugs
• src/hg/tcga/scripts/processData.py
  • 1.10 lines changed: 16, context: html, text, full: html, text
    fixed a few bugs