jsanborn: changes by commit

review to branch (2009-09-09 to 2009-09-15) v215

• initial commit
  • src/hg/tcga/bamFilter/bamFilter.c 1.1 - lines changed: 201, context: html, text, full: html, text
  • src/hg/tcga/bamFilter/makefile 1.1 - lines changed: 23, context: html, text, full: html, text
• updated
  • src/hg/tcga/bamFilter/bamFilter.c 1.2 - lines changed: 39, context: html, text, full: html, text
• fixed off-by-one error in heatmap display
  • src/hg/instinct/hgHeatmap2/drawingCode.c 1.71 - lines changed: 6, context: html, text, full: html, text
• added logicalDb line to mskcc1x1m
  • src/hg/makeDb/trackDb/human/hg18/trackDb.tcga1.ra 1.20 - lines changed: 1, context: html, text, full: html, text
• fixed a few bugs
  • src/hg/tcga/scripts/DataTypes.py 1.7 - lines changed: 57, context: html, text, full: html, text
  • src/hg/tcga/scripts/GenericDataType.py 1.7 - lines changed: 6, context: html, text, full: html, text
  • src/hg/tcga/scripts/processData.py 1.10 - lines changed: 16, context: html, text, full: html, text
• updated harvard cgh dataset
  • src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra 1.87 - lines changed: 11, context: html, text, full: html, text
• added gbm vs norm affy
  • src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.TCGAcontrol.ra 1.18 - lines changed: 20, context: html, text, full: html, text
  • src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra 1.88 - lines changed: 4, context: html, text, full: html, text
• added quality filter
  • src/hg/tcga/bamFilter/bamFilter.c 1.3 - lines changed: 11, context: html, text, full: html, text
• proper bed reading
  • src/hg/tcga/bamFilter/bamFilter.c 1.4 - lines changed: 32, context: html, text, full: html, text