holmes: changes by file

branch to review (2009-09-02 to 2009-09-09) v214

• src/hg/archaeStuff/scripts/archaeBrowser/AlignmentCompare.pm
  • 1.4 lines changed: 32, context: html, text, full: html, text
    Altered for new conservation files
  • 1.3 lines changed: 48, context: html, text, full: html, text
    Fixed file opening failure
• src/hg/archaeStuff/scripts/archaeBrowser/ConservedDomains.pm
  • 1.4 lines changed: 410, context: html, text, full: html, text
    Adding filtering
• src/hg/archaeStuff/scripts/archaeBrowser/GEOmicroarrays.pm
  • 1.1 lines changed: 1178, context: html, text, full: html, text
    GEO microarrays
• src/hg/archaeStuff/scripts/archaeBrowser/SEED.pm
  • 1.1 lines changed: 98, context: html, text, full: html, text
    adding seed tracks
• src/hg/archaeStuff/scripts/archaeBrowser/tigr.pm
  • 1.1 lines changed: 261, context: html, text, full: html, text
    Adding cmr track
• src/hg/hgc/lowelab.c
  • 1.34 lines changed: 55, context: html, text, full: html, text
    removing allpredictions.h
  • 1.33 lines changed: 171, context: html, text, full: html, text
    Predicted genes
• src/hg/inc/alignInfo.h
  • 1.1 lines changed: 71, context: html, text, full: html, text
    Adding alignment info
• src/hg/inc/cddInfo.h
  • 1.1 lines changed: 71, context: html, text, full: html, text
    Adding coverage and percent positive
• src/hg/lib/alignInfo.as
  • 1.1 lines changed: 15, context: html, text, full: html, text
    adding aligned features autosql
• src/hg/lib/alignInfo.c
  • 1.1 lines changed: 177, context: html, text, full: html, text
    Adding alignment info
• src/hg/lib/cddInfo.as
  • 1.1 lines changed: 15, context: html, text, full: html, text
    adding cdd autosql
• src/hg/lib/cddInfo.c
  • 1.1 lines changed: 177, context: html, text, full: html, text
    Adding coverage and percent positive
• src/hg/lib/cddInfo.sql
  • 1.1 lines changed: 21, context: html, text, full: html, text
    Adding coverage and percent positive
• src/hg/lib/makefile
  • 1.394 lines changed: 2, context: html, text, full: html, text
    Adding alignment and domain tracks
• src/hg/makeDb/trackDb/lowelab/trackDb.ra
  • 1.83 lines changed: 1, context: html, text, full: html, text
    changing prediction color
  • 1.82 lines changed: 5, context: html, text, full: html, text
    adding aligned features color
  • 1.81 lines changed: 123, context: html, text, full: html, text
    adding colors and combining operons