tdreszer: changes by file

branch to review (2009-09-02 to 2009-09-09) v214

• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.192 lines changed: 2, context: html, text, full: html, text
    Protection from when no validationSettings have been provided
  • 1.191 lines changed: 7, context: html, text, full: html, text
    Removed hack to default missing RawSignal to on. This has the affect that raw signals are no longer auto-created unless the view is specifically defined in the DAF.
  • 1.190 lines changed: 31, context: html, text, full: html, text
    Expanded valitationSettings support to handle ignoreAlignment and ignoreChromLen
• src/hg/hgTracks/hgTracks.c
  • 1.1596 lines changed: 9, context: html, text, full: html, text
    Changes for imgTbl withot dragReorder or dragScroll
• src/hg/hgTracks/imageV2.c
  • 1.9 lines changed: 35, context: html, text, full: html, text
    Changes for imgTbl withot dragReorder or dragScroll
• src/hg/hgTracks/imageV2.h
  • 1.6 lines changed: 10, context: html, text, full: html, text
    Changes for imgTbl withot dragReorder or dragScroll
• src/hg/hgTracks/simpleTracks.c
  • 1.100 lines changed: 1, context: html, text, full: html, text
    Registered wgEncodeGencode composite to use gencodeGeneMethods
• src/hg/js/hui.js
  • 1.32 lines changed: 30, context: html, text, full: html, text
    Cleaned up more non-jquery syntax and made multi-selects work with subtrack cfg updating
  • 1.31 lines changed: 20, context: html, text, full: html, text
    Fix for crazy quantum entanglement bug that Brooke found on cons 44-way
• src/hg/lib/hui.c
  • 1.236 lines changed: 28, context: html, text, full: html, text
    Fixed configurable subtracks to not depend upon subgroup/view membership
  • 1.234 lines changed: 3, context: html, text, full: html, text
    wgEncodeSangerGencode for Rel2 but wgEncodeGencode for V3
• src/hg/makeDb/trackDb/human/wgEncodeGencode.html
  • 1.3 lines changed: 52, context: html, text, full: html, text
    A bunch of color changes.
  • 1.2 lines changed: 1, context: html, text, full: html, text
    This is the third release July 2009
  • 1.1 lines changed: 198, context: html, text, full: html, text
    Moved hg18/wgEnoceSangerGencode to human/wgEncodeGencode for V3 and above. (Sanger left at 18 for rel2)
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.514 lines changed: 39, context: html, text, full: html, text
    A bunch of color changes for Gencode.
  • 1.512 lines changed: 65, context: html, text, full: html, text
    Splitting out RNA-seq PolyA tails into separate composte in Expression group
  • 1.511 lines changed: 81, context: html, text, full: html, text
    Added K562b/GATA-2 and K562b/YY1 for Yale/UCDavis
  • 1.510 lines changed: 9, context: html, text, full: html, text
    Cleaned up metadata for wgEncode Gencode
  • 1.509 lines changed: 38, context: html, text, full: html, text
    Added wgEncodeGencode search specs and fixed some longLabels
  • 1.508 lines changed: 92, context: html, text, full: html, text
    wgEncodeGencode V3 (alpha) and wgEcodeSangerGencode Rel2 (beta)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html
  • 1.36 lines changed: 6, context: html, text, full: html, text
    Splitting out RNA-seq PolyA tails into separate composte in Expression group
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleRNAseq.html
  • 1.1 lines changed: 163, context: html, text, full: html, text
    Splitting out RNA-seq PolyA tails into separate composte in Expression group
• src/lib/htmshell.c
  • 1.64 lines changed: 10, context: html, text, full: html, text
    Turns out OK jpg is not needed. Using 'button' tag