tdreszer: changes by commit

branch to review (2009-09-02 to 2009-09-09) v214

• Turns out OK jpg is not needed. Using 'button' tag
  • src/lib/htmshell.c 1.64 - lines changed: 10, context: html, text, full: html, text
• Expanded valitationSettings support to handle ignoreAlignment and ignoreChromLen
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.190 - lines changed: 31, context: html, text, full: html, text
• Removed hack to default missing RawSignal to on. This has the affect that raw signals are no longer auto-created unless the view is specifically defined in the DAF.
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.191 - lines changed: 7, context: html, text, full: html, text
• Protection from when no validationSettings have been provided
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.192 - lines changed: 2, context: html, text, full: html, text
• Registered wgEncodeGencode composite to use gencodeGeneMethods
  • src/hg/hgTracks/simpleTracks.c 1.100 - lines changed: 1, context: html, text, full: html, text
• wgEncodeSangerGencode for Rel2 but wgEncodeGencode for V3
  • src/hg/lib/hui.c 1.234 - lines changed: 3, context: html, text, full: html, text
• Changes for imgTbl withot dragReorder or dragScroll
  • src/hg/hgTracks/hgTracks.c 1.1596 - lines changed: 9, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c 1.9 - lines changed: 35, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.h 1.6 - lines changed: 10, context: html, text, full: html, text
• Moved hg18/wgEnoceSangerGencode to human/wgEncodeGencode for V3 and above. (Sanger left at 18 for rel2)
  • src/hg/makeDb/trackDb/human/wgEncodeGencode.html 1.1 - lines changed: 198, context: html, text, full: html, text
• wgEncodeGencode V3 (alpha) and wgEcodeSangerGencode Rel2 (beta)
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.508 - lines changed: 92, context: html, text, full: html, text
• Added wgEncodeGencode search specs and fixed some longLabels
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.509 - lines changed: 38, context: html, text, full: html, text
• Cleaned up metadata for wgEncode Gencode
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.510 - lines changed: 9, context: html, text, full: html, text
• This is the third release July 2009
  • src/hg/makeDb/trackDb/human/wgEncodeGencode.html 1.2 - lines changed: 1, context: html, text, full: html, text
• Added K562b/GATA-2 and K562b/YY1 for Yale/UCDavis
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.511 - lines changed: 81, context: html, text, full: html, text
• Splitting out RNA-seq PolyA tails into separate composte in Expression group
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.512 - lines changed: 65, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html 1.36 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleRNAseq.html 1.1 - lines changed: 163, context: html, text, full: html, text
• Fix for crazy quantum entanglement bug that Brooke found on cons 44-way
  • src/hg/js/hui.js 1.31 - lines changed: 20, context: html, text, full: html, text
• Fixed configurable subtracks to not depend upon subgroup/view membership
  • src/hg/lib/hui.c 1.236 - lines changed: 28, context: html, text, full: html, text
• Cleaned up more non-jquery syntax and made multi-selects work with subtrack cfg updating
  • src/hg/js/hui.js 1.32 - lines changed: 30, context: html, text, full: html, text
• A bunch of color changes.
  • src/hg/makeDb/trackDb/human/wgEncodeGencode.html 1.3 - lines changed: 52, context: html, text, full: html, text
• A bunch of color changes for Gencode.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.514 - lines changed: 39, context: html, text, full: html, text