aamp: changes by file

review to branch (2009-09-22 to 2009-09-29) v216

• src/hg/hgGene/microarray.c
  • 1.16 lines changed: 5, context: html, text, full: html, text
    Fixed the problem with the missing Affy Exon data from known genes. The problem stems from the removal of the requirement to have a lookup table in the Gene Sorter. In this case, that table would have been called "knownToKnown" but is simply "null" in the columnDb.ra
• src/hg/makeDb/doc/monDom5.txt
  • 1.16 lines changed: 452, context: html, text, full: html, text
    Added multiz/phastCons make instructions.
• src/hg/makeDb/trackDb/opossum/monDom5/multiz9way.html
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Forgot a period.
  • 1.6 lines changed: 2, context: html, text, full: html, text
    Added phastCons parameters to the description.
  • 1.5 lines changed: 4, context: html, text, full: html, text
    Fixed a bad sentence.
  • 1.4 lines changed: 8, context: html, text, full: html, text
    Changed the description for the conservation track to reflect the correct phastCons tree model creation procedure in this case, which was NOT to use 4D sites like in the human conservation track.