aamp: changes by commit

review to branch (2009-09-22 to 2009-09-29) v216

• Fixed the problem with the missing Affy Exon data from known genes. The problem stems from the removal of the requirement to have a lookup table in the Gene Sorter. In this case, that table would have been called "knownToKnown" but is simply "null" in the columnDb.ra
  • src/hg/hgGene/microarray.c 1.16 - lines changed: 5, context: html, text, full: html, text
• Added multiz/phastCons make instructions.
  • src/hg/makeDb/doc/monDom5.txt 1.16 - lines changed: 452, context: html, text, full: html, text
• Changed the description for the conservation track to reflect the correct phastCons tree model creation procedure in this case, which was NOT to use 4D sites like in the human conservation track.
  • src/hg/makeDb/trackDb/opossum/monDom5/multiz9way.html 1.4 - lines changed: 8, context: html, text, full: html, text
• Fixed a bad sentence.
  • src/hg/makeDb/trackDb/opossum/monDom5/multiz9way.html 1.5 - lines changed: 4, context: html, text, full: html, text
• Added phastCons parameters to the description.
  • src/hg/makeDb/trackDb/opossum/monDom5/multiz9way.html 1.6 - lines changed: 2, context: html, text, full: html, text
• Forgot a period.
  • src/hg/makeDb/trackDb/opossum/monDom5/multiz9way.html 1.7 - lines changed: 1, context: html, text, full: html, text