kuhn: changes by file

review to branch (2009-09-22 to 2009-09-29) v216

• src/hg/makeDb/trackDb/trackDb.ra
  • 1.534 lines changed: 2, context: html, text, full: html, text
    added matrix to possum.chainPonAbe2 track
• src/hg/makeDb/trackDb/chicken/galGal3/trackDb.ra
  • 1.10 lines changed: 6, context: html, text, full: html, text
    set hg18 chainnets to o_db
  • 1.9 lines changed: 6, context: html, text, full: html, text
    changed name of chainnets for monDom4 to o_db
  • 1.8 lines changed: 12, context: html, text, full: html, text
    reduced size of block for guinea pig chains by using override
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.51 lines changed: 7, context: html, text, full: html, text
    set vertChainNet track to go beyond dev and turned on four tracks for default
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.68 lines changed: 8, context: html, text, full: html, text
    changed name of old possum chains to o_db
  • 1.67 lines changed: 6, context: html, text, full: html, text
    moved override block with others
• src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra
  • 1.18 lines changed: 6, context: html, text, full: html, text
    added some parameters for zfish chain
  • 1.17 lines changed: 6, context: html, text, full: html, text
    added chainnet priority overrides for separate chainnetGalGal3 tracks
  • 1.12 lines changed: 6, context: html, text, full: html, text
    moved chimp chainnets next to orang
• src/hg/makeDb/trackDb/orangutan/trackDb.ra
  • 1.6 lines changed: 1, context: html, text, full: html, text
    changed netMonDom4 shortLabel to say Net, not Chain
• src/hg/makeDb/trackDb/platypus/ornAna1/priority.ra
  • 1.5 lines changed: 6, context: html, text, full: html, text
    moved monDom4 chainnet blocks from priority.ra to trackDb.ra and changed shortLabel to o_db
• src/hg/makeDb/trackDb/platypus/ornAna1/trackDb.ra
  • 1.11 lines changed: 9, context: html, text, full: html, text
    moved monDom4 chainnet blocks from priority.ra to trackDb.ra and changed shortLabel to o_db
• src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra
  • 1.47 lines changed: 5, context: html, text, full: html, text
    added matrix for possum chain
  • 1.46 lines changed: 8, context: html, text, full: html, text
    moved override to bottom of track block
• src/hg/makeDb/trackDb/xenTro/priority.ra
  • 1.2 lines changed: 8, context: html, text, full: html, text
    set hg18 chainnets to o_db
• src/hg/makeDb/trackDb/xenTro/trackDb.ra
  • 1.20 lines changed: 7, context: html, text, full: html, text
    set hg18 chainnets to o_db
• src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.ra
  • 1.16 lines changed: 11, context: html, text, full: html, text
    combined chainnets for hg18 from priority.ta into trackDb.ra and set shortLabel to o_db
• src/hg/makeDb/trackDb/zebrafish/danRer5/priority.ra
  • 1.6 lines changed: 6, context: html, text, full: html, text
    combined chainnets for hg18 from priority.ta into trackDb.ra and set shortLabel to o_db
• src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra
  • 1.23 lines changed: 6, context: html, text, full: html, text
    moved possum net back with other mammals
  • 1.22 lines changed: 10, context: html, text, full: html, text
    combined chainnets for hg18 from priority.ta into trackDb.ra and set shortLabel to o_db
• src/utils/qa/bigPush.csh
  • 1.7 lines changed: 1, context: html, text, full: html, text
    tweak to usage
• src/utils/qa/findNewTables.csh
  • 1.10 lines changed: 3, context: html, text, full: html, text
    fixed the way GENBANK list is used