kuhn: changes by file

branch to review (2009-09-15 to 2009-09-22) v216

• src/hg/makeDb/trackDb/trackDb.ra
  • 1.533 lines changed: 1, context: html, text, full: html, text
    removing comment about possum release alpha
  • 1.531 lines changed: 1, context: html, text, full: html, text
    dropping release alpha for chainNetMonDom5 so it works on beta
  • 1.530 lines changed: 1, context: html, text, full: html, text
    converted dbChainNet trackNames to chainNetDb to match pattern we've been using
  • 1.529 lines changed: 31, context: html, text, full: html, text
    converted dbChainNet trackNames to chainNetDb to match pattern we've been using
  • 1.528 lines changed: 3, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/cat/felCat3/trackDb.ra
  • 1.22 lines changed: 2, context: html, text, full: html, text
    restoring Human to longLabel on hg18 chain/net tracks
  • 1.21 lines changed: 20, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/chimp/priority.ra
  • 1.5 lines changed: 19, context: html, text, full: html, text
    combined priority.ra into trackDb.ra
• src/hg/makeDb/trackDb/chimp/trackDb.ra
  • 1.23 lines changed: 18, context: html, text, full: html, text
    moved chimp priority.ra into trackDb.ra
  • 1.22 lines changed: 11, context: html, text, full: html, text
    moved override blocks together
  • 1.21 lines changed: 16, context: html, text, full: html, text
    converted dbChainNet trackNames to chainNetDb to match pattern we've been using
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra
  • 1.44 lines changed: 17, context: html, text, full: html, text
    reordered chainnets (again - how do they keep getting messd up?) and set old monDom4s to o_db shortLabel
  • 1.43 lines changed: 2, context: html, text, full: html, text
    returned hg18 longLabel to Human
  • 1.42 lines changed: 2, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
  • 1.41 lines changed: 8, context: html, text, full: html, text
    moved override stuff to bottom of track blocks
  • 1.40 lines changed: 22, context: html, text, full: html, text
    moved override stuff to bottom of track blocks
• src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra
  • 1.16 lines changed: 2, context: html, text, full: html, text
    restored org name to longLabel
  • 1.15 lines changed: 14, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
  • 1.14 lines changed: 6, context: html, text, full: html, text
    moved override stuff to bottom of track blocks
• src/hg/makeDb/trackDb/dog/priority.ra
  • 1.7 lines changed: 27, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/dog/trackDb.ra
  • 1.23 lines changed: 29, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra
  • 1.35 lines changed: 3, context: html, text, full: html, text
    restoring Human to longLabel on hg18 chain/net tracks
  • 1.34 lines changed: 42, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
  • 1.33 lines changed: 8, context: html, text, full: html, text
    moved override stuff to bottom of track blocks
• src/hg/makeDb/trackDb/guineaPig/cavPor3/trackDb.ra
  • 1.6 lines changed: 20, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.419 lines changed: 2, context: html, text, full: html, text
    returned monDom4 shortLabel back to Opossum, because not pushing monDom5 chainnet set after all
  • 1.418 lines changed: 2, context: html, text, full: html, text
    changed shortLabel for old monDom4 chainnets
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.50 lines changed: 10, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/marmoset/priority.ra
  • 1.4 lines changed: 7, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/marmoset/trackDb.ra
  • 1.4 lines changed: 4, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/mouse/priority.ra
  • 1.12 lines changed: 12, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • 1.157 lines changed: 8, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.64 lines changed: 2, context: html, text, full: html, text
    restoring Human to longLabel on hg18 chain/net tracks
  • 1.63 lines changed: 12, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/opossum/priority.ra
  • 1.2 lines changed: 6, context: html, text, full: html, text
    moved priority.ra content into trackDb.ra as overrides
• src/hg/makeDb/trackDb/opossum/trackDb.ra
  • 1.30 lines changed: 7, context: html, text, full: html, text
    moved priority.ra content into trackDb.ra as overrides
• src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra
  • 1.10 lines changed: 8, context: html, text, full: html, text
    changed name to 0_db for hg18 chainnets
  • 1.9 lines changed: 2, context: html, text, full: html, text
    fixed accidently breakage of 9way. had interrupted the block when moving nscan override
  • 1.8 lines changed: 8, context: html, text, full: html, text
    moved override block to bottom of track section
• src/hg/makeDb/trackDb/orangutan/priority.ra
  • 1.2 lines changed: 14, context: html, text, full: html, text
    moved priority overrides into trackDb.ra
• src/hg/makeDb/trackDb/orangutan/trackDb.ra
  • 1.5 lines changed: 7, context: html, text, full: html, text
    changed short label to o_db for hg18 chainnets
  • 1.4 lines changed: 18, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/orangutan/ponAbe2/trackDb.ra
  • 1.16 lines changed: 2, context: html, text, full: html, text
    changed short label to o_db for hg18 chainnets
  • 1.15 lines changed: 22, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
  • 1.41 lines changed: 8, context: html, text, full: html, text
    restoring Human to longLabel on hg18 chain/net tracks
  • 1.40 lines changed: 40, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/rhesus/trackDb.ra
  • 1.12 lines changed: 2, context: html, text, full: html, text
    primate and mammal chain reordering, etc. reduced some influence of stay priority.ra files
• src/hg/makeDb/trackDb/squirt/ci1/description.html
  • 1.14 lines changed: 1, context: html, text, full: html, text
    added the common name of the squirt
• src/hg/makeDb/trackDb/squirt/ci2/description.html
  • 1.9 lines changed: 1, context: html, text, full: html, text
    added the common name of the squirt
• src/hg/makeDb/trackDb/zebrafish/danRer6/trackDb.ra
  • 1.5 lines changed: 1, context: html, text, full: html, text
    converted dbChainNet trackNames to chainNetDb to match pattern we've been using
• src/utils/qa/checkTableStatus.csh
  • 1.8 lines changed: 8, context: html, text, full: html, text
    fixed status dump to work proely for RR
• src/utils/qa/countRows.csh
  • 1.11 lines changed: 2, context: html, text, full: html, text
    inproved usage and output
• src/utils/qa/findNewTables.csh
  • 1.9 lines changed: 2, context: html, text, full: html, text
    reversed change to create_time and added GENBANK filter to grep to properly eliminate genbank tables
  • 1.8 lines changed: 1, context: html, text, full: html, text
    adjusted to use create_time instead of update_time to eliminate genbank from output
  • 1.7 lines changed: 5, context: html, text, full: html, text
    fixed to deal with MySQL 5.0 status diff
• src/utils/qa/getDbSize.csh
  • 1.13 lines changed: 1, context: html, text, full: html, text
    typo
• src/utils/qa/getRRtableStatus.csh
  • 1.14 lines changed: 2, context: html, text, full: html, text
    inproved usage and output
• src/utils/qa/qaConfig.bash
  • 1.5 lines changed: 1, context: html, text, full: html, text
    added comment about what GENBANK variable is
• src/utils/qa/qaConfig.csh
  • 1.5 lines changed: 1, context: html, text, full: html, text
    added comment about what GENBANK variable is