kent: changes by file

branch to review (2009-10-13 to 2009-10-20) v218

• src/hg/makeDb/doc/hg18.txt
  • 1.385 lines changed: 10, context: html, text, full: html, text
    Updating omimGene
• src/hg/makeDb/doc/hg19.txt
  • 1.48 lines changed: 1, context: html, text, full: html, text
    Fixed glitch in knownToHprd table build instructions.
  • 1.46 lines changed: 1, context: html, text, full: html, text
    Getting rid of _1 from hprd ID's.
  • 1.45 lines changed: 60, context: html, text, full: html, text
    Creating knownToHprd column.
  • 1.44 lines changed: 88, context: html, text, full: html, text
    Adding omimGene
  • 1.43 lines changed: 53, context: html, text, full: html, text
    Creating nibbImageProbes table.
• src/hg/makeDb/doc/visiGene.txt
  • 1.10 lines changed: 5, context: html, text, full: html, text
    Creating knownToHprd column.
• src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes12.csh
  • 1.7 lines changed: 68, context: html, text, full: html, text
    Creating knownToHprd column.
• src/hg/makeDb/doc/ucscGenes/mm9.ucscGenes12.csh
  • 1.2 lines changed: 113, context: html, text, full: html, text
    Creating knownToHprd column.
• src/hg/makeDb/schema/all.joiner
  • 1.741 lines changed: 1, context: html, text, full: html, text
    Relaxing the minCheck on omimMorbidMap a little.
• src/hg/near/makeNear.doc
  • 1.42 lines changed: 45, context: html, text, full: html, text
    Adding update procedure for hg19 P2P tracks.
• src/hg/near/hgNear/hgNearData/Human/hg19/columnDb.ra
  • 1.1 lines changed: 27, context: html, text, full: html, text
    Adding hg19 columns.
• src/hg/near/hgNear/hgNearData/Human/hg19/orderDb.ra
  • 1.1 lines changed: 19, context: html, text, full: html, text
    Adding hg19 columns.
• src/hg/near/hprdXmlToTab/hprd.c
  • 1.1 lines changed: 2172, context: html, text, full: html, text
    Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.
• src/hg/near/hprdXmlToTab/hprd.h
  • 1.1 lines changed: 627, context: html, text, full: html, text
    Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.
• src/hg/near/hprdXmlToTab/hprdXmlToTab.c
  • 1.1 lines changed: 63, context: html, text, full: html, text
    Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.
• src/hg/near/hprdXmlToTab/makefile
  • 1.1 lines changed: 37, context: html, text, full: html, text
    Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.
• src/hg/near/hprdXmlToTab/out.atree
  • 1.1 lines changed: 71, context: html, text, full: html, text
    Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.
• src/hg/near/hprdXmlToTab/out.dtd
  • 1.1 lines changed: 100, context: html, text, full: html, text
    Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.
• src/hg/near/hprdXmlToTab/out.stats
  • 1.1 lines changed: 110, context: html, text, full: html, text
    Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.
• src/hg/near/hprdXmlToTab/out.tree
  • 1.1 lines changed: 71, context: html, text, full: html, text
    Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.