kent: changes by commit

branch to review (2009-10-13 to 2009-10-20) v218

• Creating nibbImageProbes table.
  • src/hg/makeDb/doc/hg19.txt 1.43 - lines changed: 53, context: html, text, full: html, text
• Adding omimGene
  • src/hg/makeDb/doc/hg19.txt 1.44 - lines changed: 88, context: html, text, full: html, text
• Updating omimGene
  • src/hg/makeDb/doc/hg18.txt 1.385 - lines changed: 10, context: html, text, full: html, text
• Creating knownToHprd column.
  • src/hg/makeDb/doc/hg19.txt 1.45 - lines changed: 60, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes12.csh 1.7 - lines changed: 68, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/mm9.ucscGenes12.csh 1.2 - lines changed: 113, context: html, text, full: html, text
  • src/hg/makeDb/doc/visiGene.txt 1.10 - lines changed: 5, context: html, text, full: html, text
• Getting rid of _1 from hprd ID's.
  • src/hg/makeDb/doc/hg19.txt 1.46 - lines changed: 1, context: html, text, full: html, text
• Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.
  • src/hg/near/hprdXmlToTab/hprd.c 1.1 - lines changed: 2172, context: html, text, full: html, text
  • src/hg/near/hprdXmlToTab/hprd.h 1.1 - lines changed: 627, context: html, text, full: html, text
  • src/hg/near/hprdXmlToTab/hprdXmlToTab.c 1.1 - lines changed: 63, context: html, text, full: html, text
  • src/hg/near/hprdXmlToTab/makefile 1.1 - lines changed: 37, context: html, text, full: html, text
  • src/hg/near/hprdXmlToTab/out.atree 1.1 - lines changed: 71, context: html, text, full: html, text
  • src/hg/near/hprdXmlToTab/out.dtd 1.1 - lines changed: 100, context: html, text, full: html, text
  • src/hg/near/hprdXmlToTab/out.stats 1.1 - lines changed: 110, context: html, text, full: html, text
  • src/hg/near/hprdXmlToTab/out.tree 1.1 - lines changed: 71, context: html, text, full: html, text
• Adding hg19 columns.
  • src/hg/near/hgNear/hgNearData/Human/hg19/columnDb.ra 1.1 - lines changed: 27, context: html, text, full: html, text
  • src/hg/near/hgNear/hgNearData/Human/hg19/orderDb.ra 1.1 - lines changed: 19, context: html, text, full: html, text
• Relaxing the minCheck on omimMorbidMap a little.
  • src/hg/makeDb/schema/all.joiner 1.741 - lines changed: 1, context: html, text, full: html, text
• Fixed glitch in knownToHprd table build instructions.
  • src/hg/makeDb/doc/hg19.txt 1.48 - lines changed: 1, context: html, text, full: html, text
• Adding update procedure for hg19 P2P tracks.
  • src/hg/near/makeNear.doc 1.42 - lines changed: 45, context: html, text, full: html, text