hiram: changes by file

branch to review (2009-10-27 to 2009-11-03) v219

• src/hg/hgTables/makefile
  • 1.54 lines changed: 5, context: html, text, full: html, text
    Add install target to get all.joiner done properly on a make install
• src/hg/makeDb/doc/hg19.txt
  • 1.53 lines changed: 242, context: html, text, full: html, text
    Done with phastCons and phyloP for 46-way conservation track
• src/hg/makeDb/trackDb/makefile
  • 1.276 lines changed: 2, context: html, text, full: html, text
    enable gorilla gorGor2 and wallaby macEug1
• src/hg/makeDb/trackDb/gorilla/gorGor2/description.html
  • 1.1 lines changed: 129, context: html, text, full: html, text
    Initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/gorilla/gorGor2/gap.html
  • 1.1 lines changed: 63, context: html, text, full: html, text
    Initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/gorilla/gorGor2/gold.html
  • 1.1 lines changed: 22, context: html, text, full: html, text
    Initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/gorilla/gorGor2/trackDb.ra
  • 1.1 lines changed: 40, context: html, text, full: html, text
    Initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.56 lines changed: 5, context: html, text, full: html, text
    Turning on the 46 way phyloP tracks
• src/hg/qacAddGapIdx/qacAddGapIdx.c
  • 1.3 lines changed: 2, context: html, text, full: html, text
    Fixup crash in mafAddQRows and off-by-one error in qacAddGapIdx
• src/hg/ratStuff/mafAddQRows/mafAddQRows.c
  • 1.5 lines changed: 1, context: html, text, full: html, text
    Fixup crash in mafAddQRows and off-by-one error in qacAddQRows
• src/hg/trfBig/trfBig.c
  • 1.18 lines changed: 1, context: html, text, full: html, text
    Allow maybeSystem() to only warn on system errors. trf always exits with an error
• src/inc/common.h
  • 1.157 lines changed: 4, context: html, text, full: html, text
    Allow maybeSystem() to only warn on system errors. trf always exits with an error
• src/lib/common.c
  • 1.135 lines changed: 12, context: html, text, full: html, text
    Allow maybeSystem() to only warn on system errors. trf always exits with an error
• src/product/README.building.source
  • 1.17 lines changed: 9, context: html, text, full: html, text
    Take care of gif_out_line error out warning situation with newer gcc versions
• src/utils/qa/weeklybld/buildEnv.csh
  • 1.86 lines changed: 3, context: html, text, full: html, text
    Correct dates for v218 final
• src/utils/qa/weeklybld/doNewBranch.csh
  • 1.32 lines changed: 2, context: html, text, full: html, text
    remove logs before overwriting them to maintain proper ownership