hiram: changes by commit

branch to review (2009-10-27 to 2009-11-03) v219

• Correct dates for v218 final
  • src/utils/qa/weeklybld/buildEnv.csh 1.86 - lines changed: 3, context: html, text, full: html, text
• remove logs before overwriting them to maintain proper ownership
  • src/utils/qa/weeklybld/doNewBranch.csh 1.32 - lines changed: 2, context: html, text, full: html, text
• Initial files from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/gorilla/gorGor2/description.html 1.1 - lines changed: 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor2/gap.html 1.1 - lines changed: 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor2/gold.html 1.1 - lines changed: 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor2/trackDb.ra 1.1 - lines changed: 40, context: html, text, full: html, text
• enable gorilla gorGor2 and wallaby macEug1
  • src/hg/makeDb/trackDb/makefile 1.276 - lines changed: 2, context: html, text, full: html, text
• Done with phastCons and phyloP for 46-way conservation track
  • src/hg/makeDb/doc/hg19.txt 1.53 - lines changed: 242, context: html, text, full: html, text
• Turning on the 46 way phyloP tracks
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.56 - lines changed: 5, context: html, text, full: html, text
• Take care of gif_out_line error out warning situation with newer gcc versions
  • src/product/README.building.source 1.17 - lines changed: 9, context: html, text, full: html, text
• Add install target to get all.joiner done properly on a make install
  • src/hg/hgTables/makefile 1.54 - lines changed: 5, context: html, text, full: html, text
• Allow maybeSystem() to only warn on system errors. trf always exits with an error
  • src/hg/trfBig/trfBig.c 1.18 - lines changed: 1, context: html, text, full: html, text
  • src/inc/common.h 1.157 - lines changed: 4, context: html, text, full: html, text
  • src/lib/common.c 1.135 - lines changed: 12, context: html, text, full: html, text
• Fixup crash in mafAddQRows and off-by-one error in qacAddQRows
  • src/hg/ratStuff/mafAddQRows/mafAddQRows.c 1.5 - lines changed: 1, context: html, text, full: html, text
• Fixup crash in mafAddQRows and off-by-one error in qacAddGapIdx
  • src/hg/qacAddGapIdx/qacAddGapIdx.c 1.3 - lines changed: 2, context: html, text, full: html, text