hiram: changes by file

review to branch (2009-11-17 to 2009-12-01) v220

• src/hg/inc/wiggle.h
  • 1.89 lines changed: 1, context: html, text, full: html, text
    premature, need to wait for trackDb to update before eliminating the recognition of defaultViewLimits
  • 1.88 lines changed: 1, context: html, text, full: html, text
    eliminate defaultViewLimits it is all viewLimits now
• src/hg/lib/wiggleCart.c
  • 1.32 lines changed: 10, context: html, text, full: html, text
    premature, need to wait for trackDb to update before eliminating the recognition of defaultViewLimits
  • 1.31 lines changed: 10, context: html, text, full: html, text
    eliminate defaultViewLimits it is all viewLimits now
• src/hg/makeDb/doc/bosTau4.txt
  • 1.19 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/braFlo1.txt
  • 1.19 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/calJac1.txt
  • 1.21 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/cavPor3.txt
  • 1.21 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/ce1.txt
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/doc/ce2.txt
  • 1.8 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/danRer2.txt
  • 1.6 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/danRer3.txt
  • 1.17 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/danRer4.txt
  • 1.35 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/dm1.txt
  • 1.5 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/ferrAcid1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/galGal1.txt
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/doc/hg16.txt
  • 1.11 lines changed: 3, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/hg17.txt
  • 1.126 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/hg19.txt
  • 1.64 lines changed: 39, context: html, text, full: html, text
    Update genbank etc/genbank.conf to include upstreamMaf definitions, and phyloP track histograms
  • 1.63 lines changed: 16, context: html, text, full: html, text
    Proper calculation lodToBedScore for 46-way mostConserved tracks
• src/hg/makeDb/doc/metAce1.txt
  • 1.3 lines changed: 3, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/metMar1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/methBark1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/methBurt1.txt
  • 1.2 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/methJann1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/methKand1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/methMaze1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/methTher1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/mm5.txt
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/oryLat2.txt
  • 1.17 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/panTro1.txt
  • 1.8 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.7 lines changed: 1, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/doc/petMar1.txt
  • 1.23 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/picrTorr1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/pyrAby1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/pyrAer1.txt
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/doc/pyrFur2.txt
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/pyrHor1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/rheMac2.txt
  • 1.19 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/sacCer1.txt
  • 1.10 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/sulSol1.txt
  • 1.2 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/sulfAcid1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/sulfToko1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/therAcid1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/therKoda1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/doc/therVolc1.txt
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/genbank/etc/genbank.conf
  • 1.352 lines changed: 1, context: html, text, full: html, text
    turn on upstream maf for 46-way conservation on hg19
• src/hg/makeDb/hgLoadWiggle/wigTableStats.sh
  • 1.4 lines changed: 7, context: html, text, full: html, text
    Allow it to work on multiple tables in a single database
  • 1.3 lines changed: 4, context: html, text, full: html, text
    Add viewLimits to usage message
  • 1.2 lines changed: 19, context: html, text, full: html, text
    Add viewLimits recommended calculation
  • 1.1 lines changed: 45, context: html, text, full: html, text
    Initial contents
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • 1.54 lines changed: 17, context: html, text, full: html, text
    Add -settings option for debug scanning of trackDb settings hash variables
• src/hg/makeDb/trackDb/README
  • 1.91 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/loadTracks
  • 1.15 lines changed: 6, context: html, text, full: html, text
    Add -settings option to loadTracks and EXTRA options to your private trackDb
• src/hg/makeDb/trackDb/makefile
  • 1.280 lines changed: 11, context: html, text, full: html, text
    remove obsolete ponAbe1 and rn5 and add a listDbs target
  • 1.278 lines changed: 3, context: html, text, full: html, text
    Add -settings option to loadTracks and EXTRA options to your private trackDb
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.540 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.539 lines changed: 1, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/trackDb/ancestor/borEut13/trackDb.ra
  • 1.7 lines changed: 4, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/canHg10/trackDb.ra
  • 1.9 lines changed: 3, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/canHg11/trackDb.ra
  • 1.4 lines changed: 3, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/canHg12/trackDb.ra
  • 1.5 lines changed: 4, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/canHg4/trackDb.ra
  • 1.11 lines changed: 3, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/canHg9/trackDb.ra
  • 1.6 lines changed: 3, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/car46/trackDb.ra
  • 1.8 lines changed: 3, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/catArr1/trackDb.ra
  • 1.4 lines changed: 4, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/euaGli13/trackDb.ra
  • 1.3 lines changed: 4, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/gliRes13/trackDb.ra
  • 1.3 lines changed: 4, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/homIni13/trackDb.ra
  • 1.6 lines changed: 4, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/homIni14/trackDb.ra
  • 1.5 lines changed: 5, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/priMat13/trackDb.ra
  • 1.5 lines changed: 4, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/ancestor/rodEnt13/trackDb.ra
  • 1.3 lines changed: 4, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/cat/felCat3/trackDb.ra
  • 1.23 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/chicken/galGal2/trackDb.ra
  • 1.71 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/chicken/galGal3/trackDb.ra
  • 1.14 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/chimp/panTro1/trackDb.ra
  • 1.38 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.37 lines changed: 1, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra
  • 1.45 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra
  • 1.17 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.ra
  • 1.36 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra
  • 1.38 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/drosophila/trackDb.ra
  • 1.82 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/drosophila/dm1/trackDb.ra
  • 1.59 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra
  • 1.57 lines changed: 5, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/drosophila/dm3/trackDb.ra
  • 1.14 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/drosophila/droSim1/trackDb.ra
  • 1.18 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/fugu/fr2/trackDb.ra
  • 1.8 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/hiv/hiv1/trackDb.ra
  • 1.13 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/hiv/hivVax003Vax004/trackDb.ra
  • 1.6 lines changed: 6, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/hiv/hiva244/trackDb.ra
  • 1.2 lines changed: 6, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/hiv/hivgne8/trackDb.ra
  • 1.7 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/hiv/hivgne8v2/trackDb.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/hiv/hivmn/trackDb.ra
  • 1.3 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/hiv/hivmn1/trackDb.ra
  • 1.4 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/hiv/hivmn2/trackDb.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/hiv/vax004/trackDb.ra
  • 1.2 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/horse/equCab2/trackDb.ra
  • 1.10 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/human/trackDb.encode.ra
  • 1.98 lines changed: 3, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.97 lines changed: 2, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.474 lines changed: 22, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.473 lines changed: 11, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
  • 1.471 lines changed: 22, context: html, text, full: html, text
    Adding missing type wig min max limits and adding viewLimits to those guys at + or - five stdDev
• src/hg/makeDb/trackDb/human/hg16/trackDb.encode.ra
  • 1.14 lines changed: 8, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/human/hg16/trackDb.ra
  • 1.575 lines changed: 17, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.574 lines changed: 5, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/trackDb/human/hg17/trackDb.encode.ra
  • 1.177 lines changed: 9, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/human/hg17/trackDb.ra
  • 1.428 lines changed: 13, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.427 lines changed: 6, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChrom.ra
  • 1.7 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.430 lines changed: 47, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.428 lines changed: 1, context: html, text, full: html, text
    Add a viewLimits for stanfordNRSFOverlaps
  • 1.427 lines changed: 15, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.683 lines changed: 1, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.67 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lamprey/petMar1/trackDb.ra
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lancelet/braFlo1/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/trackDb.ra
  • 1.90 lines changed: 16, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.89 lines changed: 8, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/trackDb/lowelab/trackDb.ra.save
  • 1.3 lines changed: 5, context: html, text, full: html, text
    change autoScaleDefault to autoScale
  • 1.2 lines changed: 5, context: html, text, full: html, text
    change defaultViewLimits to viewLimits
• src/hg/makeDb/trackDb/lowelab/aerPer1/trackDb.ra
  • 1.15 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/aquiAeol/trackDb.ra
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/beowSpri_East_D_072007_1/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/caldMaqu0/trackDb.ra
  • 1.9 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/caldMaqu1/trackDb.ra
  • 1.17 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/campJeju/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/cenaSymb1/trackDb.ra
  • 1.10 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/desuAuda/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/desuKamc1/trackDb.ra
  • 1.5 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/eschColi_K12/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/ferrAcid1/trackDb.ra
  • 1.13 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/geobBemi0/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/geobLovl0/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/geobMeta_GS15/trackDb.ra
  • 1.5 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/geobSulf/trackDb.ra
  • 1.5 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/geobUran_RF4/trackDb.ra
  • 1.6 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/halMar1/trackDb.ra
  • 1.20 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/haloHalo1/trackDb.ra
  • 1.24 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/haloSali1/trackDb.ra
  • 1.13 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/haloUtah1/trackDb.ra
  • 1.6 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/haloVolc1/trackDb.ra
  • 1.9 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/haloVolc1_1/trackDb.ra
  • 1.8 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/haloWals1/trackDb.ra
  • 1.15 lines changed: 2, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/heliAcin_SHEEBA/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/heliHepa/trackDb.ra
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/heliPylo_26695/trackDb.ra
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/heliPylo_G27/trackDb.ra
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/heliPylo_HPAG1/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/heliPylo_J99/trackDb.ra
  • 1.4 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/lowelab/heliPylo_J99_1/trackDb.ra
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    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/zebrafish/danRer2/trackDb.ra
  • 1.34 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.ra
  • 1.51 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.ra
  • 1.35 lines changed: 1, context: html, text, full: html, text
    change autoScaleDefault to autoScale
• src/hg/utils/scanSettings.pl
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Bug in determing parent from subTrack variable, may have "off" following name
  • 1.2 lines changed: 45, context: html, text, full: html, text
    Add some arguments to make it at least a little bit useful
  • 1.1 lines changed: 171, context: html, text, full: html, text
    Initial source of a scanner
• src/product/ex.hg.conf
  • 1.19 lines changed: 10, context: html, text, full: html, text
    adding geographic allele frequency images options
  • 1.18 lines changed: 50, context: html, text, full: html, text
    Brought up to date on the occassion of losing the copy on genome-test
• src/utils/ave/ave.c
  • 1.10 lines changed: 6, context: html, text, full: html, text
    Previous standard deviation was incorrect, was not using N-1
• src/utils/wigAsciiToBinary/wiggleFAQ.html
  • 1.3 lines changed: 3, context: html, text, full: html, text
    change autoScaleDefault to be only autoScale
  • 1.2 lines changed: 4, context: html, text, full: html, text
    change defaultViewLimits to viewLimits