larrym: changes by file

review to branch (2009-11-17 to 2009-12-01) v220

• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.203 lines changed: 10, context: html, text, full: html, text
    make -database required if they are using -validateFile; remove "NULL"
  • 1.201 lines changed: 5, context: html, text, full: html, text
    add -database option
• src/hg/encode/encodeValidate/config/fields.ra
  • 1.22 lines changed: 5, context: html, text, full: html, text
    make validationSettings required; fix some typos ("type in" => "type int")
• src/hg/encode/encodeValidate/test/expected/chipseq/README.txt
  • 1.6 lines changed: 3, context: html, text, full: html, text
    update expected files to accomodate doEncodeValidate.pl changes
• src/hg/encode/encodeValidate/test/expected/chipseq/trackDb.ra
  • 1.9 lines changed: 3, context: html, text, full: html, text
    update expected files to accomodate doEncodeValidate.pl changes
• src/hg/encode/encodeValidate/test/input/chipseq/FoxP2_SL167.align_25.hg18.1.txt.BED
  • 1.3 lines changed: 5000, context: html, text, full: html, text
    fix bed coordinates and delete lines that have more than 3 mismatches
• src/hg/encode/encodeValidate/test/input/chipseq/FoxP2_SL167.align_25.hg18.2.txt.BED
  • 1.3 lines changed: 5000, context: html, text, full: html, text
    fix bed coordinates and delete lines that have more than 3 mismatches
• src/hg/encode/encodeValidate/test/input/chipseq/StanfordChip.DAF
  • 1.9 lines changed: 1, context: html, text, full: html, text
    add validationSettings
• src/hg/js/hgTracks.js
  • 1.47 lines changed: 18, context: html, text, full: html, text
    some browser specific changes for right-click code (currently dead code)