larrym: changes by commit

review to branch (2009-11-17 to 2009-12-01) v220

• some browser specific changes for right-click code (currently dead code)
  • src/hg/js/hgTracks.js 1.47 - lines changed: 18, context: html, text, full: html, text
• fix bed coordinates and delete lines that have more than 3 mismatches
  • src/hg/encode/encodeValidate/test/input/chipseq/FoxP2_SL167.align_25.hg18.1.txt.BED 1.3 - lines changed: 5000, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/test/input/chipseq/FoxP2_SL167.align_25.hg18.2.txt.BED 1.3 - lines changed: 5000, context: html, text, full: html, text
• update expected files to accomodate doEncodeValidate.pl changes
  • src/hg/encode/encodeValidate/test/expected/chipseq/README.txt 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/test/expected/chipseq/trackDb.ra 1.9 - lines changed: 3, context: html, text, full: html, text
• add validationSettings
  • src/hg/encode/encodeValidate/test/input/chipseq/StanfordChip.DAF 1.9 - lines changed: 1, context: html, text, full: html, text
• make validationSettings required; fix some typos ("type in" => "type int")
  • src/hg/encode/encodeValidate/config/fields.ra 1.22 - lines changed: 5, context: html, text, full: html, text
• add -database option
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.201 - lines changed: 5, context: html, text, full: html, text
• make -database required if they are using -validateFile; remove "NULL"
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.203 - lines changed: 10, context: html, text, full: html, text