kate: changes by file

branch to review (2009-12-01 to 2009-12-09) v221

• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.205 lines changed: 3, context: html, text, full: html, text
    Update assembly in projects table (support for mouse and hg19)
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.150 lines changed: 7, context: html, text, full: html, text
    Add new grants from ARRA (stimulus) and other Mouse ENCODE (LICR)
  • 1.148 lines changed: 69, context: html, text, full: html, text
    Add organism setting to Cell Line entries (all existing ones are for Human)
  • 1.147 lines changed: 139, context: html, text, full: html, text
    Make targetLink handling symmetric with other links (remove special syntax). Splits targetLink setting into two -- targetId and targetUrl
• src/hg/encode/encodeValidate/config/labs.ra
  • 1.11 lines changed: 16, context: html, text, full: html, text
    Add new grants from ARRA (stimulus) and other Mouse ENCODE (LICR)
• src/hg/encode/encodeValidate/config/pi.ra
  • 1.4 lines changed: 34, context: html, text, full: html, text
    Add new grants from ARRA (stimulus) and other Mouse ENCODE (LICR)
• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • 1.29 lines changed: 81, context: html, text, full: html, text
    1. Add support for 'organism' option (for mouse) 2. Cleanup (e.g. remove unused ifdef) 3. Add 'tag' option
  • 1.28 lines changed: 23, context: html, text, full: html, text
    Simplify by: 1) setting link style globally 2) removing special syntax in antibody targets
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.435 lines changed: 83, context: html, text, full: html, text
    Fix bad metadata fields in UW CHIP-seq. Tweak track labels too for consistency
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.709 lines changed: 17, context: html, text, full: html, text
    Fix bad metadata fields in UW CHIP-seq. Tweak track labels too for consistency
  • 1.708 lines changed: 253, context: html, text, full: html, text
    Short label improvements to UW ChIP-seq by Thomas Juettemann
• src/hg/utils/automation/Encode.pm
  • 1.51 lines changed: 2, context: html, text, full: html, text
    Allow mouse