kate: changes by commit

branch to review (2009-12-01 to 2009-12-09) v221

• Allow mouse
  • src/hg/utils/automation/Encode.pm 1.51 - lines changed: 2, context: html, text, full: html, text
• Simplify by: 1) setting link style globally 2) removing special syntax in antibody targets
  • src/hg/encode/hgEncodeVocab/hgEncodeVocab.c 1.28 - lines changed: 23, context: html, text, full: html, text
• Make targetLink handling symmetric with other links (remove special syntax). Splits targetLink setting into two -- targetId and targetUrl
  • src/hg/encode/encodeValidate/config/cv.ra 1.147 - lines changed: 139, context: html, text, full: html, text
• Add organism setting to Cell Line entries (all existing ones are for Human)
  • src/hg/encode/encodeValidate/config/cv.ra 1.148 - lines changed: 69, context: html, text, full: html, text
• 1. Add support for 'organism' option (for mouse) 2. Cleanup (e.g. remove unused ifdef) 3. Add 'tag' option
  • src/hg/encode/hgEncodeVocab/hgEncodeVocab.c 1.29 - lines changed: 81, context: html, text, full: html, text
• Add new grants from ARRA (stimulus) and other Mouse ENCODE (LICR)
  • src/hg/encode/encodeValidate/config/cv.ra 1.150 - lines changed: 7, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/config/labs.ra 1.11 - lines changed: 16, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/config/pi.ra 1.4 - lines changed: 34, context: html, text, full: html, text
• Update assembly in projects table (support for mouse and hg19)
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.205 - lines changed: 3, context: html, text, full: html, text
• Short label improvements to UW ChIP-seq by Thomas Juettemann
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.708 - lines changed: 253, context: html, text, full: html, text
• Fix bad metadata fields in UW CHIP-seq. Tweak track labels too for consistency
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.435 - lines changed: 83, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.709 - lines changed: 17, context: html, text, full: html, text