braney: changes by file

branch to review (2009-12-14 to 2010-01-04) v222

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.168 lines changed: 2, context: html, text, full: html, text
    fix some strings
  • 1.167 lines changed: 1, context: html, text, full: html, text
    change tag for longPolyA
  • 1.165 lines changed: 5, context: html, text, full: html, text
    add 1x75
  • 1.164 lines changed: 5, context: html, text, full: html, text
    add new maapping protocol
  • 1.163 lines changed: 6, context: html, text, full: html, text
    add new mapping algorithm BB2
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.729 lines changed: 1, context: html, text, full: html, text
    fix controlled vocabulary links
  • 1.724 lines changed: 36, context: html, text, full: html, text
    change A+ to tot in Hannon small RNA-seq
  • 1.723 lines changed: 35, context: html, text, full: html, text
    change H1-hESC cell compartment to cell rather than cytosol for GIS RNA tracks
  • 1.721 lines changed: 38, context: html, text, full: html, text
    change labels for Cshl Short RNA-seq to Cshl Small Rna-seq
  • 1.720 lines changed: 115, context: html, text, full: html, text
    add A+ to Transcriptome tracks where polyA+ is the default
  • 1.719 lines changed: 5, context: html, text, full: html, text
    fix big bed filename for Cshl Long tracks
• src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra
  • 1.27 lines changed: 5, context: html, text, full: html, text
    need to bring in some other of the zebrafish trackDb for affyZebrafish
  • 1.26 lines changed: 1, context: html, text, full: html, text
    take out override on a track that is composite in danRer5, but not in zebrafish