braney: changes by commit

branch to review (2009-12-14 to 2010-01-04) v222

• fix big bed filename for Cshl Long tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.719 - lines changed: 5, context: html, text, full: html, text
• add A+ to Transcriptome tracks where polyA+ is the default
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.720 - lines changed: 115, context: html, text, full: html, text
• change labels for Cshl Short RNA-seq to Cshl Small Rna-seq
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.721 - lines changed: 38, context: html, text, full: html, text
• take out override on a track that is composite in danRer5, but not in zebrafish
  • src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra 1.26 - lines changed: 1, context: html, text, full: html, text
• need to bring in some other of the zebrafish trackDb for affyZebrafish
  • src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra 1.27 - lines changed: 5, context: html, text, full: html, text
• change H1-hESC cell compartment to cell rather than cytosol for GIS RNA tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.723 - lines changed: 35, context: html, text, full: html, text
• change A+ to tot in Hannon small RNA-seq
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.724 - lines changed: 36, context: html, text, full: html, text
• fix controlled vocabulary links
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.729 - lines changed: 1, context: html, text, full: html, text
• add new mapping algorithm BB2
  • src/hg/encode/encodeValidate/config/cv.ra 1.163 - lines changed: 6, context: html, text, full: html, text
• add new maapping protocol
  • src/hg/encode/encodeValidate/config/cv.ra 1.164 - lines changed: 5, context: html, text, full: html, text
• add 1x75
  • src/hg/encode/encodeValidate/config/cv.ra 1.165 - lines changed: 5, context: html, text, full: html, text
• change tag for longPolyA
  • src/hg/encode/encodeValidate/config/cv.ra 1.167 - lines changed: 1, context: html, text, full: html, text
• fix some strings
  • src/hg/encode/encodeValidate/config/cv.ra 1.168 - lines changed: 2, context: html, text, full: html, text