hiram: changes by file

branch to review (2009-12-14 to 2010-01-04) v222

• src/hg/hgTracks/wigTrack.c
  • 1.100 lines changed: 8, context: html, text, full: html, text
    Allow whisker plots to show colors in positive and negative tracks
• src/hg/lib/wigDataStream.c
  • 1.87 lines changed: 3, context: html, text, full: html, text
    Raising the HUGE_LIMIT to 4280000000 caused a very large slow down in some custom tracks. Doesn't make any sense.
  • 1.86 lines changed: 17, context: html, text, full: html, text
    Raise memory limit for data fetch operations
• src/hg/makeDb/doc/ailMel1.txt
  • 1.2 lines changed: 41, context: html, text, full: html, text
    ready for genbank run
  • 1.1 lines changed: 41, context: html, text, full: html, text
    Initial sequence for Panda
• src/hg/makeDb/genbank/etc/genbank.conf
  • 1.354 lines changed: 1, context: html, text, full: html, text
    need ailMel1.lift = no
  • 1.353 lines changed: 14, context: html, text, full: html, text
    adding panda ailMel1
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • 1.74 lines changed: 4, context: html, text, full: html, text
    adding ailMel - Panda with Dog specifications
• src/hg/makeDb/trackDb/makefile
  • 1.281 lines changed: 1, context: html, text, full: html, text
    Add ailMel1 panda to the build
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • 1.32 lines changed: 3, context: html, text, full: html, text
    Need release alpha and beta on Mm5
  • 1.31 lines changed: 76, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.29 lines changed: 245, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
  • 1.28 lines changed: 19, context: html, text, full: html, text
    do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
  • 1.27 lines changed: 364, context: html, text, full: html, text
    clean up chain net composites for non-released genomes on hg18
  • 1.26 lines changed: 55, context: html, text, full: html, text
    all zebrafinch taeGut1 chain net tracks are composite
  • 1.25 lines changed: 42, context: html, text, full: html, text
    all lanclet braFlo1 chain net tracks are composite
  • 1.24 lines changed: 84, context: html, text, full: html, text
    all guinea pig cavPor3 and 2 chain net tracks are composite
  • 1.23 lines changed: 41, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.22 lines changed: 42, context: html, text, full: html, text
    all lamprey petMar1 chain and net tracks are composites
  • 1.21 lines changed: 42, context: html, text, full: html, text
    all lizard anoCar1 chain and net tracks are now composite
  • 1.20 lines changed: 273, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.19 lines changed: 43, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.18 lines changed: 40, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.17 lines changed: 42, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.16 lines changed: 40, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.15 lines changed: 82, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.14 lines changed: 41, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.13 lines changed: 40, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.12 lines changed: 42, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.11 lines changed: 40, context: html, text, full: html, text
    chainNetHg17 is needed for canFam1 and monDom1 to complete human business
  • 1.10 lines changed: 126, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.9 lines changed: 42, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.8 lines changed: 41, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.578 lines changed: 2, context: html, text, full: html, text
    Need release alpha and beta on Mm5
  • 1.577 lines changed: 24, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.576 lines changed: 22, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
  • 1.575 lines changed: 150, context: html, text, full: html, text
    do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
  • 1.574 lines changed: 12, context: html, text, full: html, text
    clean up chain net composites for non-released genomes on hg18
  • 1.573 lines changed: 34, context: html, text, full: html, text
    all zebrafinch taeGut1 chain net tracks are composite
  • 1.572 lines changed: 3, context: html, text, full: html, text
    all lanclet braFlo1 chain net tracks are composite
  • 1.571 lines changed: 6, context: html, text, full: html, text
    all guinea pig cavPor3 and 2 chain net tracks are composite
  • 1.570 lines changed: 4, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.569 lines changed: 2, context: html, text, full: html, text
    all lamprey petMar1 chain and net tracks are composites
  • 1.568 lines changed: 3, context: html, text, full: html, text
    all lizard anoCar1 chain and net tracks are now composite
  • 1.567 lines changed: 18, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.566 lines changed: 4, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.565 lines changed: 3, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.564 lines changed: 3, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.563 lines changed: 6, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.562 lines changed: 3, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.561 lines changed: 4, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.560 lines changed: 25, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.559 lines changed: 2, context: html, text, full: html, text
    chainNetHg17 is needed for canFam1 and monDom1 to complete human business
  • 1.558 lines changed: 8, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.557 lines changed: 3, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.556 lines changed: 5, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/armadillo/trackDb.chainNet.ra
  • 1.2 lines changed: 1, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.1 lines changed: 1, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
• src/hg/makeDb/trackDb/armadillo/trackDb.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
• src/hg/makeDb/trackDb/bushbaby/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/bushbaby/trackDb.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/cat/trackDb.chainNet.ra
  • 1.3 lines changed: 9, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.2 lines changed: 9, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.1 lines changed: 18, context: html, text, full: html, text
    all canFam chain net tracks are now composites
• src/hg/makeDb/trackDb/cat/trackDb.ra
  • 1.9 lines changed: 2, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.8 lines changed: 2, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.7 lines changed: 4, context: html, text, full: html, text
    all canFam chain net tracks are now composites
• src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra
  • 1.18 lines changed: 7, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.17 lines changed: 6, context: html, text, full: html, text
    all zebrafinch taeGut1 chain net tracks are composite
  • 1.16 lines changed: 3, context: html, text, full: html, text
    all lanclet braFlo1 chain net tracks are composite
  • 1.15 lines changed: 6, context: html, text, full: html, text
    all guinea pig cavPor3 and 2 chain net tracks are composite
  • 1.14 lines changed: 7, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.13 lines changed: 3, context: html, text, full: html, text
    all lamprey petMar1 chain and net tracks are composites
  • 1.12 lines changed: 3, context: html, text, full: html, text
    all lizard anoCar1 chain and net tracks are now composite
  • 1.11 lines changed: 9, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.10 lines changed: 6, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.9 lines changed: 6, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.8 lines changed: 5, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.7 lines changed: 6, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.6 lines changed: 4, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.5 lines changed: 6, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.4 lines changed: 6, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.3 lines changed: 13, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.2 lines changed: 13, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.1 lines changed: 109, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/chicken/trackDb.ra
  • 1.17 lines changed: 4, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/chicken/galGal2/trackDb.chainNet.ra
  • 1.4 lines changed: 5, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.3 lines changed: 3, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.2 lines changed: 5, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 11, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/chicken/galGal2/trackDb.ra
  • 1.74 lines changed: 4, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.73 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/chicken/galGal3/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
• src/hg/makeDb/trackDb/chicken/galGal3/trackDb.ra
  • 1.17 lines changed: 7, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
• src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra
  • 1.10 lines changed: 3, context: html, text, full: html, text
    do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
  • 1.9 lines changed: 3, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.8 lines changed: 8, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.7 lines changed: 3, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.6 lines changed: 8, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.5 lines changed: 3, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.4 lines changed: 7, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.3 lines changed: 9, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all canFam chain net tracks are now composites
  • 1.1 lines changed: 47, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/chimp/trackDb.ra
  • 1.27 lines changed: 2, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.26 lines changed: 3, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.25 lines changed: 4, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/chimp/panTro1/trackDb.chainNet.ra
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 3, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/chimp/panTro1/trackDb.ra
  • 1.40 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra
  • 1.9 lines changed: 3, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.8 lines changed: 4, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.7 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.6 lines changed: 17, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.5 lines changed: 4, context: html, text, full: html, text
    eliminate duplicate entry for chainNetCanFam2
  • 1.4 lines changed: 3, context: html, text, full: html, text
    all canFam chain net tracks are now composites
  • 1.3 lines changed: 2, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/cow/bosTau2/trackDb.chainNet.ra
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 3, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/cow/bosTau2/trackDb.ra
  • 1.10 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/cow/bosTau3/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/cow/bosTau3/trackDb.ra
  • 1.9 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra
  • 1.12 lines changed: 9, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.11 lines changed: 3, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
  • 1.10 lines changed: 6, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.9 lines changed: 3, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.8 lines changed: 4, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.7 lines changed: 9, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.6 lines changed: 4, context: html, text, full: html, text
    chainNetHg17 is needed for canFam1 and monDom1 to complete human business
  • 1.5 lines changed: 7, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.4 lines changed: 9, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.3 lines changed: 13, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/dog/trackDb.ra
  • 1.30 lines changed: 6, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.29 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.28 lines changed: 4, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.chainNet.ra
  • 1.2 lines changed: 3, context: html, text, full: html, text
    chainNetHg17 is needed for canFam1 and monDom1 to complete human business
  • 1.1 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.ra
  • 1.38 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/dog/canFam2/trackDb.chainNet.ra
  • 1.2 lines changed: 1, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.1 lines changed: 1, context: html, text, full: html, text
    shorLabel monDom4 for hgwdev
• src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra
  • 1.42 lines changed: 6, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.41 lines changed: 7, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/elephant/trackDb.chainNet.ra
  • 1.2 lines changed: 1, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.1 lines changed: 1, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
• src/hg/makeDb/trackDb/elephant/trackDb.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
• src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra
  • 1.7 lines changed: 18, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.6 lines changed: 6, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.5 lines changed: 5, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.4 lines changed: 10, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.3 lines changed: 12, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.2 lines changed: 13, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.1 lines changed: 64, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/fugu/trackDb.ra
  • 1.70 lines changed: 6, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.69 lines changed: 2, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.68 lines changed: 14, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.67 lines changed: 2, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.66 lines changed: 6, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.65 lines changed: 4, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/fugu/fr1/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composite
• src/hg/makeDb/trackDb/fugu/fr1/trackDb.ra
  • 1.3 lines changed: 4, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
• src/hg/makeDb/trackDb/fugu/fr2/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    all mouse human net tracks are now composites
• src/hg/makeDb/trackDb/fugu/fr2/trackDb.ra
  • 1.10 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/guineaPig/trackDb.chainNet.ra
  • 1.5 lines changed: 3, context: html, text, full: html, text
    do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
  • 1.4 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.3 lines changed: 9, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.2 lines changed: 6, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.1 lines changed: 21, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/guineaPig/trackDb.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra
  • 1.8 lines changed: 5, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.7 lines changed: 4, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.6 lines changed: 3, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.5 lines changed: 9, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.4 lines changed: 9, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.3 lines changed: 3, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all canFam chain net tracks are now composites
  • 1.1 lines changed: 36, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/horse/trackDb.ra
  • 1.21 lines changed: 1, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.20 lines changed: 2, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.19 lines changed: 3, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.18 lines changed: 7, context: html, text, full: html, text
    eliminate duplicate chainNetMonDom5 override
  • 1.17 lines changed: 4, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/horse/equCab1/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/horse/equCab1/trackDb.ra
  • 1.7 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
  • 1.28 lines changed: 9, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
  • 1.27 lines changed: 3, context: html, text, full: html, text
    do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
  • 1.26 lines changed: 24, context: html, text, full: html, text
    clean up chain net composites for non-released genomes on hg18
  • 1.25 lines changed: 3, context: html, text, full: html, text
    all zebrafinch taeGut1 chain net tracks are composite
  • 1.24 lines changed: 4, context: html, text, full: html, text
    all lanclet braFlo1 chain net tracks are composite
  • 1.23 lines changed: 6, context: html, text, full: html, text
    all guinea pig cavPor3 and 2 chain net tracks are composite
  • 1.22 lines changed: 6, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.21 lines changed: 3, context: html, text, full: html, text
    all lamprey petMar1 chain and net tracks are composites
  • 1.20 lines changed: 3, context: html, text, full: html, text
    all lizard anoCar1 chain and net tracks are now composite
  • 1.19 lines changed: 15, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.18 lines changed: 10, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.17 lines changed: 5, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.16 lines changed: 6, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.15 lines changed: 10, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.14 lines changed: 6, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.13 lines changed: 5, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.12 lines changed: 6, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.11 lines changed: 6, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.10 lines changed: 8, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.9 lines changed: 7, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.8 lines changed: 7, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.7 lines changed: 12, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.6 lines changed: 3, context: html, text, full: html, text
    all canFam chain net tracks are now composites
  • 1.5 lines changed: 18, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.484 lines changed: 47, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
  • 1.483 lines changed: 8, context: html, text, full: html, text
    do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
  • 1.482 lines changed: 5, context: html, text, full: html, text
    clean up chain net composites for non-released genomes on hg18
  • 1.481 lines changed: 15, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
• src/hg/makeDb/trackDb/human/hg16/trackDb.chainNet.ra
  • 1.3 lines changed: 3, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.2 lines changed: 5, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.1 lines changed: 8, context: html, text, full: html, text
    all mouse human net tracks are now composites
• src/hg/makeDb/trackDb/human/hg16/trackDb.ra
  • 1.581 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra
  • 1.9 lines changed: 3, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.8 lines changed: 3, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.7 lines changed: 4, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.6 lines changed: 4, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.5 lines changed: 4, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.4 lines changed: 6, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.3 lines changed: 3, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.2 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 31, context: html, text, full: html, text
    all canFam chain net tracks are now composites
• src/hg/makeDb/trackDb/human/hg17/trackDb.ra
  • 1.433 lines changed: 5, context: html, text, full: html, text
    all canFam chain net tracks are now composites
• src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra
  • 1.9 lines changed: 12, context: html, text, full: html, text
    clean up chain net composites for non-released genomes on hg18
  • 1.8 lines changed: 6, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.7 lines changed: 4, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.6 lines changed: 3, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.5 lines changed: 7, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.4 lines changed: 3, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.3 lines changed: 3, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.1 lines changed: 41, context: html, text, full: html, text
    all rat chain and net tracks are now composites
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.445 lines changed: 8, context: html, text, full: html, text
    clean up chain net composites for non-released genomes on hg18
  • 1.444 lines changed: 2, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.443 lines changed: 3, context: html, text, full: html, text
    all rat chain and net tracks are now composites
• src/hg/makeDb/trackDb/human/hg19/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.78 lines changed: 5, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra
  • 1.4 lines changed: 3, context: html, text, full: html, text
    all lanclet braFlo1 chain net tracks are composite
  • 1.3 lines changed: 7, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.2 lines changed: 13, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.1 lines changed: 23, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/lamprey/trackDb.ra
  • 1.7 lines changed: 4, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/lancelet/trackDb.chainNet.ra
  • 1.3 lines changed: 3, context: html, text, full: html, text
    all lamprey petMar1 chain and net tracks are composites
  • 1.2 lines changed: 6, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 9, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/lancelet/trackDb.ra
  • 1.2 lines changed: 4, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra
  • 1.6 lines changed: 3, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.5 lines changed: 5, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.4 lines changed: 6, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.3 lines changed: 7, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.2 lines changed: 13, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.1 lines changed: 34, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/lizard/trackDb.ra
  • 1.8 lines changed: 4, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.7 lines changed: 4, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra
  • 1.7 lines changed: 1, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.6 lines changed: 3, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.5 lines changed: 1, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.4 lines changed: 4, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.3 lines changed: 2, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/marmoset/trackDb.ra
  • 1.8 lines changed: 1, context: html, text, full: html, text
    It does no good to have a release beta in an override
• src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra
  • 1.7 lines changed: 5, context: html, text, full: html, text
    all lamprey petMar1 chain and net tracks are composites
  • 1.6 lines changed: 10, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.5 lines changed: 5, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.4 lines changed: 3, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.3 lines changed: 10, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.2 lines changed: 6, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 39, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/medaka/trackDb.ra
  • 1.22 lines changed: 2, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.21 lines changed: 1, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.20 lines changed: 11, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra
  • 1.26 lines changed: 20, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.25 lines changed: 15, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
  • 1.24 lines changed: 15, context: html, text, full: html, text
    do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
  • 1.23 lines changed: 3, context: html, text, full: html, text
    all lanclet braFlo1 chain net tracks are composite
  • 1.22 lines changed: 6, context: html, text, full: html, text
    all guinea pig cavPor3 and 2 chain net tracks are composite
  • 1.21 lines changed: 3, context: html, text, full: html, text
    all lamprey petMar1 chain and net tracks are composites
  • 1.20 lines changed: 3, context: html, text, full: html, text
    all lizard anoCar1 chain and net tracks are now composite
  • 1.19 lines changed: 12, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.18 lines changed: 10, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.17 lines changed: 3, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.16 lines changed: 6, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.15 lines changed: 7, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.14 lines changed: 7, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.13 lines changed: 5, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.12 lines changed: 6, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.11 lines changed: 6, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.10 lines changed: 9, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.9 lines changed: 9, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.8 lines changed: 9, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.7 lines changed: 6, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.6 lines changed: 3, context: html, text, full: html, text
    all canFam chain net tracks are now composites
  • 1.5 lines changed: 12, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • 1.175 lines changed: 4, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.174 lines changed: 75, context: html, text, full: html, text
    catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
  • 1.173 lines changed: 36, context: html, text, full: html, text
    do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
  • 1.172 lines changed: 2, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.170 lines changed: 4, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.169 lines changed: 4, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.168 lines changed: 2, context: html, text, full: html, text
    all rat chain and net tracks are now composites
• src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra
  • 1.7 lines changed: 3, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.6 lines changed: 3, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.5 lines changed: 3, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.4 lines changed: 3, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.3 lines changed: 3, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.2 lines changed: 4, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.1 lines changed: 19, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra
  • 1.58 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra
  • 1.8 lines changed: 9, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.7 lines changed: 3, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.6 lines changed: 3, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.5 lines changed: 3, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.4 lines changed: 3, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.3 lines changed: 1, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.1 lines changed: 22, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra
  • 1.61 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.73 lines changed: 3, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra
  • 1.15 lines changed: 4, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.14 lines changed: 6, context: html, text, full: html, text
    all guinea pig cavPor3 and 2 chain net tracks are composite
  • 1.13 lines changed: 6, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.12 lines changed: 11, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.11 lines changed: 6, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.10 lines changed: 11, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.9 lines changed: 4, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.8 lines changed: 5, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.7 lines changed: 6, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.6 lines changed: 3, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.5 lines changed: 7, context: html, text, full: html, text
    chainNetHg17 is needed for canFam1 and monDom1 to complete human business
  • 1.4 lines changed: 18, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.3 lines changed: 14, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.2 lines changed: 12, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.1 lines changed: 112, context: html, text, full: html, text
    all canFam chain net tracks are now composites
• src/hg/makeDb/trackDb/opossum/trackDb.ra
  • 1.40 lines changed: 2, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.39 lines changed: 2, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.38 lines changed: 2, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.37 lines changed: 1, context: html, text, full: html, text
    chainNetHg17 is needed for canFam1 and monDom1 to complete human business
  • 1.36 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.35 lines changed: 3, context: html, text, full: html, text
    all canFam chain net tracks are now composites
• src/hg/makeDb/trackDb/opossum/monDom1/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    chainNetHg17 is needed for canFam1 and monDom1 to complete human business
• src/hg/makeDb/trackDb/opossum/monDom1/trackDb.ra
  • 1.25 lines changed: 4, context: html, text, full: html, text
    chainNetHg17 is needed for canFam1 and monDom1 to complete human business
• src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra
  • 1.8 lines changed: 4, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.7 lines changed: 3, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.6 lines changed: 7, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.5 lines changed: 3, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.4 lines changed: 5, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.3 lines changed: 5, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.1 lines changed: 29, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/opossum/monDom4/trackDb.ra
  • 1.26 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/opossum/monDom5/trackDb.chainNet.ra
  • 1.4 lines changed: 3, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.3 lines changed: 3, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.1 lines changed: 9, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra
  • 1.24 lines changed: 7, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.23 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra
  • 1.8 lines changed: 6, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.7 lines changed: 3, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.6 lines changed: 3, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.5 lines changed: 3, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.4 lines changed: 6, context: html, text, full: html, text
    all platypus ornAna1 chain and net tracks are composites
  • 1.3 lines changed: 4, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.2 lines changed: 9, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.1 lines changed: 34, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/orangutan/trackDb.ra
  • 1.8 lines changed: 4, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/orangutan/ponAbe2/trackDb.ra
  • 1.19 lines changed: 3, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/panda/ailMel1/description.html
  • 1.1 lines changed: 0, context: html, text, full: html, text
    Initial contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/panda/ailMel1/gap.html
  • 1.1 lines changed: 0, context: html, text, full: html, text
    Initial contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/panda/ailMel1/gold.html
  • 1.1 lines changed: 0, context: html, text, full: html, text
    Initial contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/panda/ailMel1/trackDb.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    Initial contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra
  • 1.10 lines changed: 14, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.9 lines changed: 6, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.8 lines changed: 4, context: html, text, full: html, text
    all lizard anoCar1 chain and net tracks are now composite
  • 1.7 lines changed: 6, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.6 lines changed: 6, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.5 lines changed: 6, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.4 lines changed: 13, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.3 lines changed: 6, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.2 lines changed: 7, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/platypus/trackDb.ra
  • 1.12 lines changed: 3, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.11 lines changed: 3, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.10 lines changed: 8, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/rabbit/trackDb.chainNet.ra
  • 1.2 lines changed: 1, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.1 lines changed: 1, context: html, text, full: html, text
    all guinea pig cavPor3 and 2 chain net tracks are composite
• src/hg/makeDb/trackDb/rabbit/trackDb.ra
  • 1.3 lines changed: 4, context: html, text, full: html, text
    all guinea pig cavPor3 and 2 chain net tracks are composite
• src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra
  • 1.14 lines changed: 6, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.13 lines changed: 3, context: html, text, full: html, text
    all guinea pig cavPor3 and 2 chain net tracks are composite
  • 1.12 lines changed: 3, context: html, text, full: html, text
    all horse equCab1 and 2 chain net tracks are composite
  • 1.11 lines changed: 11, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.10 lines changed: 3, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.9 lines changed: 8, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.8 lines changed: 4, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.7 lines changed: 14, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.6 lines changed: 9, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.5 lines changed: 13, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.4 lines changed: 5, context: html, text, full: html, text
    all canFam chain net tracks are now composites
  • 1.3 lines changed: 11, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/rat/trackDb.ra
  • 1.64 lines changed: 45, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.63 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.62 lines changed: 4, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/rat/rn3/trackDb.chainNet.ra
  • 1.3 lines changed: 2, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 4, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/rat/rn3/trackDb.ra
  • 1.65 lines changed: 2, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.64 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
  • 1.46 lines changed: 2, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra
  • 1.8 lines changed: 11, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.7 lines changed: 3, context: html, text, full: html, text
    Marmoset calJac1 chain and net tracks are now all composites
  • 1.6 lines changed: 4, context: html, text, full: html, text
    rhesus and orangutan chain and net tracks are now all composites
  • 1.5 lines changed: 5, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.4 lines changed: 3, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.3 lines changed: 7, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.2 lines changed: 11, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.1 lines changed: 44, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/rhesus/trackDb.ra
  • 1.18 lines changed: 2, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
  • 1.17 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.16 lines changed: 4, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.15 lines changed: 4, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra
  • 1.51 lines changed: 28, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra
  • 1.7 lines changed: 3, context: html, text, full: html, text
    all lizard anoCar1 chain and net tracks are now composite
  • 1.6 lines changed: 9, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.5 lines changed: 6, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.4 lines changed: 8, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.3 lines changed: 9, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.2 lines changed: 13, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 48, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/stickleback/trackDb.ra
  • 1.24 lines changed: 2, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.23 lines changed: 12, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/tenrec/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
• src/hg/makeDb/trackDb/tenrec/trackDb.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
• src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra
  • 1.7 lines changed: 7, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.6 lines changed: 9, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.5 lines changed: 8, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.4 lines changed: 4, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.3 lines changed: 5, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.2 lines changed: 27, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 60, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/tetraodon/trackDb.ra
  • 1.48 lines changed: 7, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.47 lines changed: 6, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.46 lines changed: 5, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.45 lines changed: 5, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.44 lines changed: 18, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
• src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.ra
  • 1.3 lines changed: 4, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
• src/hg/makeDb/trackDb/treeShrew/trackDb.chainNet.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/treeShrew/trackDb.ra
  • 1.1 lines changed: 0, context: html, text, full: html, text
    cleaning rough edges around chain net composite conversion
• src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra
  • 1.8 lines changed: 7, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.7 lines changed: 3, context: html, text, full: html, text
    all lizard anoCar1 chain and net tracks are now composite
  • 1.6 lines changed: 10, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.5 lines changed: 6, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.4 lines changed: 27, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.3 lines changed: 13, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.2 lines changed: 12, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.1 lines changed: 78, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/xenTro/trackDb.ra
  • 1.27 lines changed: 2, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.26 lines changed: 2, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.25 lines changed: 4, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.chainNet.ra
  • 1.3 lines changed: 5, context: html, text, full: html, text
    all zebrafish chain and net tracks are now composites
  • 1.2 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 7, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.ra
  • 1.41 lines changed: 1, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.40 lines changed: 3, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.chainNet.ra
  • 1.2 lines changed: 1, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.1 lines changed: 1, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.ra
  • 1.21 lines changed: 8, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.20 lines changed: 3, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/zebraFinch/trackDb.chainNet.ra
  • 1.2 lines changed: 13, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.1 lines changed: 13, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/zebraFinch/trackDb.ra
  • 1.8 lines changed: 3, context: html, text, full: html, text
    all galGal chain net tracks are now composite
• src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra
  • 1.12 lines changed: 13, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.11 lines changed: 8, context: html, text, full: html, text
    all Medaka oryLat2 chain and net tracks are now composites
  • 1.10 lines changed: 6, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.9 lines changed: 3, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.8 lines changed: 5, context: html, text, full: html, text
    all stickleback chain and net tracks are now composite
  • 1.7 lines changed: 3, context: html, text, full: html, text
    all Tetraodon chain and net tracks are now composites
  • 1.6 lines changed: 6, context: html, text, full: html, text
    all chimp chain net tracks are now composites
  • 1.5 lines changed: 9, context: html, text, full: html, text
    all rat chain and net tracks are now composites
  • 1.4 lines changed: 13, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.3 lines changed: 13, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.2 lines changed: 6, context: html, text, full: html, text
    all galGal chain net tracks are now composite
  • 1.1 lines changed: 85, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/zebrafish/trackDb.ra
  • 1.63 lines changed: 5, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.62 lines changed: 33, context: html, text, full: html, text
    all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • 1.61 lines changed: 1, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.60 lines changed: 6, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
  • 1.59 lines changed: 4, context: html, text, full: html, text
    all monDom chain nets are now composites
• src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.chainNet.ra
  • 1.3 lines changed: 3, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.2 lines changed: 2, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 5, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.ra
  • 1.56 lines changed: 9, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.55 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.chainNet.ra
  • 1.3 lines changed: 3, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.2 lines changed: 2, context: html, text, full: html, text
    all mouse chain net tracks are now composites
  • 1.1 lines changed: 5, context: html, text, full: html, text
    all hg18 hg19 chain net tracks are now composites
• src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.ra
  • 1.40 lines changed: 5, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
  • 1.39 lines changed: 2, context: html, text, full: html, text
    Fugu fr1 and fr2 chain net tracks are now all composite
  • 1.38 lines changed: 4, context: html, text, full: html, text
    all mouse chain net tracks are now composites
• src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra
  • 1.28 lines changed: 8, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
• src/hg/makeDb/trackDb/zebrafish/danRer6/trackDb.ra
  • 1.10 lines changed: 6, context: html, text, full: html, text
    some more edge clean up of chainNet composites for hgwdev
• src/hg/utils/phyloTrees/findScores.pl
  • 1.2 lines changed: 50, context: html, text, full: html, text
    Look for older styles, do the reverse lookup automatically if not found and show defaults when not specified
• src/lib/errCatch.c
  • 1.5 lines changed: 1, context: html, text, full: html, text
    need a cast on a pointer to (int) for compile on MAC