hiram: changes by commit

branch to review (2009-12-14 to 2010-01-04) v222

• Allow whisker plots to show colors in positive and negative tracks
  • src/hg/hgTracks/wigTrack.c 1.100 - lines changed: 8, context: html, text, full: html, text
• Initial contents from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/panda/ailMel1/description.html 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/panda/ailMel1/gap.html 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/panda/ailMel1/gold.html 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/panda/ailMel1/trackDb.ra 1.1 - lines changed: 0, context: html, text, full: html, text
• Add ailMel1 panda to the build
  • src/hg/makeDb/trackDb/makefile 1.281 - lines changed: 1, context: html, text, full: html, text
• It does no good to have a release beta in an override
  • src/hg/makeDb/trackDb/marmoset/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
• all monDom chain nets are now composites
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.1 - lines changed: 109, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/trackDb.ra 1.17 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.1 - lines changed: 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.ra 1.25 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra 1.41 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.3 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.ra 1.28 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/trackDb.chainNet.ra 1.1 - lines changed: 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/trackDb.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra 1.1 - lines changed: 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.ra 1.17 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.5 - lines changed: 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.5 - lines changed: 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra 1.1 - lines changed: 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/trackDb.ra 1.8 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra 1.2 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.ra 1.10 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.3 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.ra 1.62 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra 1.1 - lines changed: 44, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.ra 1.15 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.8 - lines changed: 41, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.556 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra 1.1 - lines changed: 78, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.ra 1.25 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.1 - lines changed: 85, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.59 - lines changed: 4, context: html, text, full: html, text
• shorLabel monDom4 for hgwdev
  • src/hg/makeDb/trackDb/dog/canFam2/trackDb.chainNet.ra 1.1 - lines changed: 1, context: html, text, full: html, text
• eliminate duplicate chainNetMonDom5 override
  • src/hg/makeDb/trackDb/horse/trackDb.ra 1.18 - lines changed: 7, context: html, text, full: html, text
• all canFam chain net tracks are now composites
  • src/hg/makeDb/trackDb/cat/trackDb.chainNet.ra 1.1 - lines changed: 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/trackDb.ra 1.7 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra 1.1 - lines changed: 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.ra 1.433 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.1 - lines changed: 112, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.ra 1.35 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.4 - lines changed: 5, context: html, text, full: html, text
• eliminate duplicate entry for chainNetCanFam2
  • src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra 1.5 - lines changed: 4, context: html, text, full: html, text
• all galGal chain net tracks are now composite
  • src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra 1.1 - lines changed: 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.65 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/trackDb.chainNet.ra 1.2 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.7 - lines changed: 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra 1.1 - lines changed: 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/trackDb.ra 1.7 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lancelet/trackDb.chainNet.ra 1.1 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lancelet/trackDb.ra 1.2 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra 1.1 - lines changed: 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/trackDb.ra 1.7 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.7 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra 1.1 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.2 - lines changed: 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra 1.3 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.5 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.9 - lines changed: 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.557 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra 1.2 - lines changed: 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.chainNet.ra 1.1 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.ra 1.20 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebraFinch/trackDb.chainNet.ra 1.1 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebraFinch/trackDb.ra 1.8 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.2 - lines changed: 6, context: html, text, full: html, text
• Raise memory limit for data fetch operations
  • src/hg/lib/wigDataStream.c 1.86 - lines changed: 17, context: html, text, full: html, text
• all hg18 hg19 chain net tracks are now composites
  • src/hg/makeDb/trackDb/cat/trackDb.chainNet.ra 1.2 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal2/trackDb.chainNet.ra 1.1 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.2 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro1/trackDb.chainNet.ra 1.1 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.3 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.ra 1.26 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau2/trackDb.chainNet.ra 1.1 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau3/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra 1.6 - lines changed: 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.4 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra 1.2 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.66 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/trackDb.chainNet.ra 1.3 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab1/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra 1.4 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.ra 1.19 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra 1.2 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra 1.2 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/trackDb.ra 1.8 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra 1.4 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra 1.1 - lines changed: 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra 1.1 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra 1.1 - lines changed: 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.8 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.3 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra 1.2 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra 1.4 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.ra 1.11 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/trackDb.chainNet.ra 1.1 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.6 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra 1.2 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.ra 1.16 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra 1.1 - lines changed: 48, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra 1.1 - lines changed: 60, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra 1.3 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.chainNet.ra 1.1 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebraFinch/trackDb.chainNet.ra 1.2 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.chainNet.ra 1.1 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.chainNet.ra 1.1 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.3 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.60 - lines changed: 6, context: html, text, full: html, text
• Raising the HUGE_LIMIT to 4280000000 caused a very large slow down in some custom tracks. Doesn't make any sense.
  • src/hg/lib/wigDataStream.c 1.87 - lines changed: 3, context: html, text, full: html, text
• all mouse chain net tracks are now composites
  • src/hg/makeDb/trackDb/cat/trackDb.chainNet.ra 1.3 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/trackDb.ra 1.8 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal2/trackDb.chainNet.ra 1.2 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal2/trackDb.ra 1.73 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.3 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro1/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro1/trackDb.ra 1.40 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.4 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau2/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau2/trackDb.ra 1.10 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau3/trackDb.ra 1.9 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra 1.7 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam1/trackDb.chainNet.ra 1.1 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam1/trackDb.ra 1.38 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.5 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.ra 1.29 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/fr2/trackDb.ra 1.10 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra 1.3 - lines changed: 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.67 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/trackDb.chainNet.ra 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab1/trackDb.ra 1.7 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra 1.5 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.ra 1.20 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.ra 1.581 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra 1.2 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.8 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lancelet/trackDb.chainNet.ra 1.2 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra 1.3 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra 1.2 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.ra 1.20 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra 1.58 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra 1.61 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/trackDb.ra 1.26 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/trackDb.chainNet.ra 1.1 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra 1.23 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.4 - lines changed: 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.ra 1.36 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra 1.5 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/trackDb.ra 1.64 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.7 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.ra 1.63 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra 1.3 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.ra 1.17 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra 1.2 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.ra 1.23 - lines changed: 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra 1.2 - lines changed: 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.44 - lines changed: 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.10 - lines changed: 126, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.558 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra 1.4 - lines changed: 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.ra 1.26 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.ra 1.40 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.chainNet.ra 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.ra 1.55 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.chainNet.ra 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.ra 1.38 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.4 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.61 - lines changed: 1, context: html, text, full: html, text
• all mouse human net tracks are now composites
  • src/hg/makeDb/trackDb/fugu/fr2/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.chainNet.ra 1.1 - lines changed: 8, context: html, text, full: html, text
• chainNetHg17 is needed for canFam1 and monDom1 to complete human business
  • src/hg/makeDb/trackDb/dog/canFam1/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.6 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom1/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom1/trackDb.ra 1.25 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.5 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.ra 1.37 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.11 - lines changed: 40, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.559 - lines changed: 2, context: html, text, full: html, text
• Look for older styles, do the reverse lookup automatically if not found and show defaults when not specified
  • src/hg/utils/phyloTrees/findScores.pl 1.2 - lines changed: 50, context: html, text, full: html, text
• all rat chain and net tracks are now composites
  • src/hg/makeDb/trackDb/chicken/galGal2/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.4 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.5 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra 1.8 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.7 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.chainNet.ra 1.2 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra 1.1 - lines changed: 41, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.443 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.9 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra 1.2 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.9 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra 1.168 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra 1.3 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.ra 1.38 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.12 - lines changed: 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.560 - lines changed: 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra 1.5 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.ra 1.27 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.5 - lines changed: 9, context: html, text, full: html, text
• all chimp chain net tracks are now composites
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.5 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.8 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra 1.7 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra 1.4 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.10 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.10 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra 1.169 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra 1.4 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.7 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.ra 1.39 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra 1.3 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.8 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra 1.5 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.13 - lines changed: 40, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.561 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.6 - lines changed: 6, context: html, text, full: html, text
• all Tetraodon chain and net tracks are now composites
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.6 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra 1.4 - lines changed: 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.68 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra 1.5 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.11 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra 1.3 - lines changed: 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.ra 1.21 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.11 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra 1.170 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra 1.3 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.14 - lines changed: 41, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.562 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.7 - lines changed: 3, context: html, text, full: html, text
• all platypus ornAna1 chain and net tracks are composites
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.7 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra 1.9 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra 1.8 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.ra 1.21 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.12 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra 1.4 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.12 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra 1.5 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.8 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra 1.4 - lines changed: 6, context: html, text, full: html, text
• all stickleback chain and net tracks are now composite
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.8 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra 1.5 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.69 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.13 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.481 - lines changed: 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra 1.5 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.ra 1.22 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra 1.5 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.13 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra 1.3 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.45 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.8 - lines changed: 5, context: html, text, full: html, text
• all tetraodon xenTro1 and xenTro2 chain net tracks are now composite
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.9 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra 1.6 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.14 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.14 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.9 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.9 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.15 - lines changed: 82, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.563 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.9 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.62 - lines changed: 33, context: html, text, full: html, text
• rhesus and orangutan chain and net tracks are now all composites
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.6 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.ra 1.27 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra 1.7 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra 1.5 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.15 - lines changed: 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra 1.5 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.15 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra 1.172 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra 1.6 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.10 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra 1.5 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra 1.6 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.ra 1.12 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.10 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra 1.6 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.16 - lines changed: 40, context: html, text, full: html, text
• Fugu fr1 and fr2 chain net tracks are now all composite
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.10 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra 1.8 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.444 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.16 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra 1.5 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.16 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra 1.4 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.ra 1.24 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.ra 1.3 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra 1.4 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.46 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.17 - lines changed: 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.564 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.ra 1.39 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.10 - lines changed: 6, context: html, text, full: html, text
• Marmoset calJac1 chain and net tracks are now all composites
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.7 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.9 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra 1.7 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.17 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.17 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.11 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra 1.7 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra 1.7 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.18 - lines changed: 40, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.565 - lines changed: 3, context: html, text, full: html, text
• Initial sequence for Panda
  • src/hg/makeDb/doc/ailMel1.txt 1.1 - lines changed: 41, context: html, text, full: html, text
• all Medaka oryLat2 chain and net tracks are now composites
  • src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra 1.6 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.70 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.18 - lines changed: 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra 1.3 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.18 - lines changed: 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra 1.7 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra 1.5 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra 1.5 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.47 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.19 - lines changed: 43, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.566 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.11 - lines changed: 8, context: html, text, full: html, text
• adding panda ailMel1
  • src/hg/makeDb/genbank/etc/genbank.conf 1.353 - lines changed: 14, context: html, text, full: html, text
• adding ailMel - Panda with Dog specifications
  • src/hg/makeDb/genbank/src/lib/gbGenome.c 1.74 - lines changed: 4, context: html, text, full: html, text
• need ailMel1.lift = no
  • src/hg/makeDb/genbank/etc/genbank.conf 1.354 - lines changed: 1, context: html, text, full: html, text
• ready for genbank run
  • src/hg/makeDb/doc/ailMel1.txt 1.2 - lines changed: 41, context: html, text, full: html, text
• need a cast on a pointer to (int) for compile on MAC
  • src/lib/errCatch.c 1.5 - lines changed: 1, context: html, text, full: html, text
• all zebrafish chain and net tracks are now composites
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.11 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.8 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/fr1/trackDb.ra 1.3 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra 1.7 - lines changed: 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra 1.9 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.19 - lines changed: 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra 1.6 - lines changed: 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra 1.7 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra 1.7 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.19 - lines changed: 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra 1.7 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/trackDb.chainNet.ra 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.12 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.11 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra 1.6 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra 1.6 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.20 - lines changed: 273, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.567 - lines changed: 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra 1.6 - lines changed: 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.chainNet.ra 1.3 - lines changed: 5, context: html, text, full: html, text
• all zebrafish chain and net tracks are now composite
  • src/hg/makeDb/trackDb/fugu/fr1/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
• all lizard anoCar1 chain and net tracks are now composite
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.12 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.20 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.20 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra 1.8 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra 1.7 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.21 - lines changed: 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.568 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra 1.7 - lines changed: 3, context: html, text, full: html, text
• all lamprey petMar1 chain and net tracks are composites
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.13 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.21 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lancelet/trackDb.chainNet.ra 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra 1.7 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.21 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.22 - lines changed: 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.569 - lines changed: 2, context: html, text, full: html, text
• all horse equCab1 and 2 chain net tracks are composite
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.14 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.9 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.10 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra 1.8 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.22 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.13 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra 1.9 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.12 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.23 - lines changed: 41, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.570 - lines changed: 4, context: html, text, full: html, text
• all guinea pig cavPor3 and 2 chain net tracks are composite
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.15 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.23 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.22 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.14 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rabbit/trackDb.chainNet.ra 1.1 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rabbit/trackDb.ra 1.3 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.13 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.24 - lines changed: 84, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.571 - lines changed: 6, context: html, text, full: html, text
• all lanclet braFlo1 chain net tracks are composite
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.16 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.24 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.23 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.25 - lines changed: 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.572 - lines changed: 3, context: html, text, full: html, text
• all zebrafinch taeGut1 chain net tracks are composite
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.17 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.25 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.26 - lines changed: 55, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.573 - lines changed: 34, context: html, text, full: html, text
• clean up chain net composites for non-released genomes on hg18
  • src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra 1.9 - lines changed: 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.445 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.26 - lines changed: 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.482 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.27 - lines changed: 364, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.574 - lines changed: 12, context: html, text, full: html, text
• do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
  • src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra 1.10 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/trackDb.chainNet.ra 1.5 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.27 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.483 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.24 - lines changed: 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra 1.173 - lines changed: 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.28 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.575 - lines changed: 150, context: html, text, full: html, text
• catching up chain and net composites for hgwdev only bosTau1 dasNov1 echTel1 loxAfr1 dasNov2 loxAfr3
  • src/hg/makeDb/trackDb/armadillo/trackDb.chainNet.ra 1.1 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/armadillo/trackDb.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.11 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/trackDb.chainNet.ra 1.1 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/trackDb.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra 1.28 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.484 - lines changed: 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.25 - lines changed: 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra 1.174 - lines changed: 75, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.29 - lines changed: 245, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.576 - lines changed: 22, context: html, text, full: html, text
• cleaning rough edges around chain net composite conversion
  • src/hg/makeDb/trackDb/bushbaby/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/bushbaby/trackDb.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/trackDb.ra 1.9 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam2/trackDb.chainNet.ra 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra 1.42 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.12 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.ra 1.30 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.78 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra 1.8 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.73 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra 1.26 - lines changed: 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra 1.175 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/ponAbe2/trackDb.ra 1.19 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra 1.8 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rabbit/trackDb.chainNet.ra 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/trackDb.chainNet.ra 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/trackDb.ra 1.65 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn4/trackDb.ra 1.46 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra 1.14 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.ra 1.64 - lines changed: 45, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra 1.51 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra 1.8 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.ra 1.18 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/treeShrew/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/treeShrew/trackDb.ra 1.1 - lines changed: 0, context: html, text, full: html, text
• some more edge clean up of chainNet composites for hgwdev
  • src/hg/makeDb/trackDb/armadillo/trackDb.chainNet.ra 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal2/trackDb.chainNet.ra 1.4 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal2/trackDb.ra 1.74 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal3/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal3/trackDb.ra 1.17 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra 1.18 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/trackDb.chainNet.ra 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra 1.8 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra 1.24 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.15 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.ra 1.40 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra 1.10 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tenrec/trackDb.chainNet.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tenrec/trackDb.ra 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra 1.7 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.48 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.31 - lines changed: 76, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.577 - lines changed: 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra 1.8 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.ra 1.41 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.chainNet.ra 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.ra 1.21 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.ra 1.56 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.ra 1.40 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra 1.28 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer6/trackDb.ra 1.10 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra 1.12 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.63 - lines changed: 5, context: html, text, full: html, text
• Need release alpha and beta on Mm5
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.32 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.578 - lines changed: 2, context: html, text, full: html, text