kate: changes by file

branch to review (2009-12-14 to 2010-01-04) v222

• src/hg/encode/encodeValidate/doEncodeReport.pl
  • 1.9 lines changed: 1, context: html, text, full: html, text
    Ignore revoked entries
  • 1.8 lines changed: 2, context: html, text, full: html, text
    Restore proper lib path
  • 1.7 lines changed: 57, context: html, text, full: html, text
    More successful at sniffing out release date
  • 1.6 lines changed: 52, context: html, text, full: html, text
    Pretty close to duplicating the manual spreadsheet
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.210 lines changed: 1, context: html, text, full: html, text
    Add check for missing DDF file
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.162 lines changed: 4, context: html, text, full: html, text
    Add datatype for SUNY
  • 1.161 lines changed: 7, context: html, text, full: html, text
    Add CV term for submissions versions (used by reporting)
  • 1.160 lines changed: 86, context: html, text, full: html, text
    Add labels and CV of data types, for use in automated reporting
• src/hg/encode/encodeValidate/config/pi.ra
  • 1.6 lines changed: 5, context: html, text, full: html, text
    Remove problem entry for now
  • 1.5 lines changed: 13, context: html, text, full: html, text
    Add labels for automated reporting
• src/hg/hgTracks/hgTracks.c
  • 1.1615 lines changed: 5, context: html, text, full: html, text
    Add count of sequences to chromInfo page (hg19 has greatly expanded the count over hg18)
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.735 lines changed: 2, context: html, text, full: html, text
    Fix some labels to match metadata and tablenames
  • 1.734 lines changed: 7, context: html, text, full: html, text
    Correct some submission IDs so reporting works properly
  • 1.733 lines changed: 2, context: html, text, full: html, text
    Roll back default wiggle height for UW tracks for consistency w/ other ENCODE tracks
  • 1.732 lines changed: 9, context: html, text, full: html, text
    Add some missing protocol metadata
  • 1.731 lines changed: 3, context: html, text, full: html, text
    Stay with V2 convention
• src/hg/utils/automation/Encode.pm
  • 1.55 lines changed: 26, context: html, text, full: html, text
    Add subroutines for dealing with pipeline statuses
  • 1.54 lines changed: 16, context: html, text, full: html, text
    Add access for CV rags (used by reporting)