kate: changes by commit

branch to review (2009-12-14 to 2010-01-04) v222

• Add count of sequences to chromInfo page (hg19 has greatly expanded the count over hg18)
  • src/hg/hgTracks/hgTracks.c 1.1615 - lines changed: 5, context: html, text, full: html, text
• Pretty close to duplicating the manual spreadsheet
  • src/hg/encode/encodeValidate/doEncodeReport.pl 1.6 - lines changed: 52, context: html, text, full: html, text
• Add labels and CV of data types, for use in automated reporting
  • src/hg/encode/encodeValidate/config/cv.ra 1.160 - lines changed: 86, context: html, text, full: html, text
• Add labels for automated reporting
  • src/hg/encode/encodeValidate/config/pi.ra 1.5 - lines changed: 13, context: html, text, full: html, text
• Add access for CV rags (used by reporting)
  • src/hg/utils/automation/Encode.pm 1.54 - lines changed: 16, context: html, text, full: html, text
• Add check for missing DDF file
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.210 - lines changed: 1, context: html, text, full: html, text
• Stay with V2 convention
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.731 - lines changed: 3, context: html, text, full: html, text
• More successful at sniffing out release date
  • src/hg/encode/encodeValidate/doEncodeReport.pl 1.7 - lines changed: 57, context: html, text, full: html, text
• Add subroutines for dealing with pipeline statuses
  • src/hg/utils/automation/Encode.pm 1.55 - lines changed: 26, context: html, text, full: html, text
• Restore proper lib path
  • src/hg/encode/encodeValidate/doEncodeReport.pl 1.8 - lines changed: 2, context: html, text, full: html, text
• Add some missing protocol metadata
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.732 - lines changed: 9, context: html, text, full: html, text
• Add CV term for submissions versions (used by reporting)
  • src/hg/encode/encodeValidate/config/cv.ra 1.161 - lines changed: 7, context: html, text, full: html, text
• Ignore revoked entries
  • src/hg/encode/encodeValidate/doEncodeReport.pl 1.9 - lines changed: 1, context: html, text, full: html, text
• Roll back default wiggle height for UW tracks for consistency w/ other ENCODE tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.733 - lines changed: 2, context: html, text, full: html, text
• Remove problem entry for now
  • src/hg/encode/encodeValidate/config/pi.ra 1.6 - lines changed: 5, context: html, text, full: html, text
• Correct some submission IDs so reporting works properly
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.734 - lines changed: 7, context: html, text, full: html, text
• Fix some labels to match metadata and tablenames
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.735 - lines changed: 2, context: html, text, full: html, text
• Add datatype for SUNY
  • src/hg/encode/encodeValidate/config/cv.ra 1.162 - lines changed: 4, context: html, text, full: html, text