hiram: changes by file

review to branch (2010-01-12 to 2010-01-19) v223

• src/hg/hgc/hgc.c
  • 1.1588 lines changed: 54, context: html, text, full: html, text
    adding vega gene version identifier to those gene clicks
• src/hg/makeDb/doc/ce6.txt
  • 1.18 lines changed: 62, context: html, text, full: html, text
    adding algBinding tracks
• src/hg/makeDb/doc/hg19.txt
  • 1.71 lines changed: 21, context: html, text, full: html, text
    vega Gene update done v36 for hg19 v37 for mm9
• src/hg/makeDb/doc/macEug1.txt
  • 1.2 lines changed: 44, context: html, text, full: html, text
    running genbank for Wallaby
• src/hg/makeDb/doc/mm9.txt
  • 1.120 lines changed: 19, context: html, text, full: html, text
    vega Gene update done v36 for hg19 v37 for mm9
• src/hg/makeDb/doc/oryCun2.txt
  • 1.4 lines changed: 61, context: html, text, full: html, text
    done with genbank for rabbit
• src/hg/makeDb/doc/sacCer2.txt
  • 1.15 lines changed: 13, context: html, text, full: html, text
    add liftOver to sacCer1
• src/hg/makeDb/doc/tetNig1.txt
  • 1.21 lines changed: 12, context: html, text, full: html, text
    liftOver to tetNig2 done
• src/hg/makeDb/genbank/etc/genbank.conf
  • 1.357 lines changed: 14, context: html, text, full: html, text
    adding susScr1 Pig
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • 1.75 lines changed: 3, context: html, text, full: html, text
    adding susScr - Pig
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.83 lines changed: 26, context: html, text, full: html, text
    adding hg19 vegaGeneComposite track;
• src/hg/makeDb/trackDb/human/hg19/vegaGeneComposite.html
  • 1.1 lines changed: 0, context: html, text, full: html, text
    Adding chromosome definitions for vegaGene on hg19
• src/hg/makeDb/trackDb/worm/ce6/algBinding.html
  • 1.1 lines changed: 50, context: html, text, full: html, text
    Adding ALG-1 Argonaute binding sites from the Yeo lab.
• src/hg/makeDb/trackDb/worm/ce6/trackDb.ra
  • 1.20 lines changed: 17, context: html, text, full: html, text
    appropriate visibility defaults for algBinding track
  • 1.19 lines changed: 170, context: html, text, full: html, text
    Adding ALG-1 Argonaute binding sites from the Yeo lab.
• src/hg/utils/automation/doEnsGeneUpdate.pl
  • 1.22 lines changed: 1, context: html, text, full: html, text
    proper .ra name for vegaGene
  • 1.21 lines changed: 37, context: html, text, full: html, text
    finish doCleanup for vegaGene
  • 1.20 lines changed: 122, context: html, text, full: html, text
    adding vegaGene processing option