hiram: changes by commit

review to branch (2010-01-12 to 2010-01-19) v223

• running genbank for Wallaby
  • src/hg/makeDb/doc/macEug1.txt 1.2 - lines changed: 44, context: html, text, full: html, text
• done with genbank for rabbit
  • src/hg/makeDb/doc/oryCun2.txt 1.4 - lines changed: 61, context: html, text, full: html, text
• adding susScr1 Pig
  • src/hg/makeDb/genbank/etc/genbank.conf 1.357 - lines changed: 14, context: html, text, full: html, text
• adding susScr - Pig
  • src/hg/makeDb/genbank/src/lib/gbGenome.c 1.75 - lines changed: 3, context: html, text, full: html, text
• add liftOver to sacCer1
  • src/hg/makeDb/doc/sacCer2.txt 1.15 - lines changed: 13, context: html, text, full: html, text
• Adding ALG-1 Argonaute binding sites from the Yeo lab.
  • src/hg/makeDb/trackDb/worm/ce6/algBinding.html 1.1 - lines changed: 50, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce6/trackDb.ra 1.19 - lines changed: 170, context: html, text, full: html, text
• appropriate visibility defaults for algBinding track
  • src/hg/makeDb/trackDb/worm/ce6/trackDb.ra 1.20 - lines changed: 17, context: html, text, full: html, text
• adding vegaGene processing option
  • src/hg/utils/automation/doEnsGeneUpdate.pl 1.20 - lines changed: 122, context: html, text, full: html, text
• adding vega gene version identifier to those gene clicks
  • src/hg/hgc/hgc.c 1.1588 - lines changed: 54, context: html, text, full: html, text
• finish doCleanup for vegaGene
  • src/hg/utils/automation/doEnsGeneUpdate.pl 1.21 - lines changed: 37, context: html, text, full: html, text
• proper .ra name for vegaGene
  • src/hg/utils/automation/doEnsGeneUpdate.pl 1.22 - lines changed: 1, context: html, text, full: html, text
• vega Gene update done v36 for hg19 v37 for mm9
  • src/hg/makeDb/doc/hg19.txt 1.71 - lines changed: 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm9.txt 1.120 - lines changed: 19, context: html, text, full: html, text
• adding hg19 vegaGeneComposite track;
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.83 - lines changed: 26, context: html, text, full: html, text
• Adding chromosome definitions for vegaGene on hg19
  • src/hg/makeDb/trackDb/human/hg19/vegaGeneComposite.html 1.1 - lines changed: 0, context: html, text, full: html, text
• liftOver to tetNig2 done
  • src/hg/makeDb/doc/tetNig1.txt 1.21 - lines changed: 12, context: html, text, full: html, text
• adding algBinding tracks
  • src/hg/makeDb/doc/ce6.txt 1.18 - lines changed: 62, context: html, text, full: html, text