hiram: changes by file

branch to review (2010-01-05 to 2010-01-12) v223

• src/hg/makeDb/doc/gasAcu1.txt
  • 1.42 lines changed: 7, context: html, text, full: html, text
    finishing off tetNig2 and into the pushQ
• src/hg/makeDb/doc/tetNig2.txt
  • 1.8 lines changed: 45, context: html, text, full: html, text
    finishing off tetNig2 and into the pushQ
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • 1.58 lines changed: 8, context: html, text, full: html, text
    the track hash was not accumulating track names twice when necessary
  • 1.57 lines changed: 13, context: html, text, full: html, text
    Adding some verbose 3 on the pruning business so it can be watched
• src/hg/makeDb/schema/all.joiner
  • 1.758 lines changed: 12, context: html, text, full: html, text
    tetNig2 now fully enabled
• src/hg/makeDb/trackDb/tetraodon/gaze.html
  • 1.1 lines changed: 0, context: html, text, full: html, text
    fixup chainNetDanRer6 for tetNig2 and gaze track for both tetNig1 and 2
• src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra
  • 1.8 lines changed: 5, context: html, text, full: html, text
    fixup chainNetDanRer6 for tetNig2 and gaze track for both tetNig1 and 2
• src/hg/makeDb/trackDb/tetraodon/trackDb.ra
  • 1.49 lines changed: 16, context: html, text, full: html, text
    fixup chainNetDanRer6 for tetNig2 and gaze track for both tetNig1 and 2
• src/hg/makeDb/trackDb/tetraodon/tetNig1/gaze.html
  • 1.2 lines changed: 24, context: html, text, full: html, text
    fixup chainNetDanRer6 for tetNig2 and gaze track for both tetNig1 and 2
• src/hg/makeDb/trackDb/tetraodon/tetNig1/trackDb.ra
  • 1.24 lines changed: 16, context: html, text, full: html, text
    fixup chainNetDanRer6 for tetNig2 and gaze track for both tetNig1 and 2
• src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.chainNet.ra
  • 1.2 lines changed: 3, context: html, text, full: html, text
    fixup chainNetDanRer6 for tetNig2 and gaze track for both tetNig1 and 2
• src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    fixup chainNetDanRer6 for tetNig2 and gaze track for both tetNig1 and 2
• src/hg/utils/automation/makePushQSql.pl
  • 1.28 lines changed: 30, context: html, text, full: html, text
    fix up some chain net confusion and beginning to get ready to use composite settings