hiram: changes by commit

branch to review (2010-01-05 to 2010-01-12) v223

• Adding some verbose 3 on the pruning business so it can be watched
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c 1.57 - lines changed: 13, context: html, text, full: html, text
• the track hash was not accumulating track names twice when necessary
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c 1.58 - lines changed: 8, context: html, text, full: html, text
• fixup chainNetDanRer6 for tetNig2 and gaze track for both tetNig1 and 2
  • src/hg/makeDb/trackDb/tetraodon/gaze.html 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig1/gaze.html 1.2 - lines changed: 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig1/trackDb.ra 1.24 - lines changed: 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.chainNet.ra 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.ra 1.4 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra 1.8 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.49 - lines changed: 16, context: html, text, full: html, text
• tetNig2 now fully enabled
  • src/hg/makeDb/schema/all.joiner 1.758 - lines changed: 12, context: html, text, full: html, text
• fix up some chain net confusion and beginning to get ready to use composite settings
  • src/hg/utils/automation/makePushQSql.pl 1.28 - lines changed: 30, context: html, text, full: html, text
• finishing off tetNig2 and into the pushQ
  • src/hg/makeDb/doc/gasAcu1.txt 1.42 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/tetNig2.txt 1.8 - lines changed: 45, context: html, text, full: html, text