tdreszer: changes by file

branch to review (2010-01-05 to 2010-01-12) v223

• src/hg/encode/DAFs/YDHChipSeqInput.daf
  • 1.2 lines changed: 3, context: html, text, full: html, text
    Inputs have replicates
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.211 lines changed: 1, context: html, text, full: html, text
    restrictionEnzyme cv term should support control terms
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.181 lines changed: 7, context: html, text, full: html, text
    Added G1 phase for Stam lab
  • 1.180 lines changed: 20, context: html, text, full: html, text
    Change 10 cell lines from provisional to approved
  • 1.179 lines changed: 14, context: html, text, full: html, text
    Missed GM12872 in earlier ci fo cells for Stam
  • 1.178 lines changed: 119, context: html, text, full: html, text
    Added 5 new (provisional) cell lines for Stam and 4 new antibodies for Snyder
  • 1.177 lines changed: 6, context: html, text, full: html, text
    Added Rabbit_IgG for Snyder
  • 1.176 lines changed: 1, context: html, text, full: html, text
    Changed name of treatment
  • 1.175 lines changed: 91, context: html, text, full: html, text
    Added 5 new cells (3 provisional), 1 new antibody and 1 new treatment
  • 1.174 lines changed: 5, context: html, text, full: html, text
    Removed restrictionEnzyme 'None'. This should be done by controlled vocab
  • 1.172 lines changed: 48, context: html, text, full: html, text
    Added 4 antibodies for Snyder lab
• src/hg/encode/encodeValidate/config/fields.ra
  • 1.25 lines changed: 5, context: html, text, full: html, text
    Added phase to ddf
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.748 lines changed: 1, context: html, text, full: html, text
    Insignificant change to UMass Uniqueness settings
  • 1.744 lines changed: 338, context: html, text, full: html, text
    Cleaned up some extra tags in Open Chromatin
  • 1.743 lines changed: 145, context: html, text, full: html, text
    Reorganized Open Chromatin and Duke Affy Exon
  • 1.740 lines changed: 3184, context: html, text, full: html, text
    Big change to Open Chromatin, due to adding 77 tracks for Jan 2010 freeze. Made alpha and beta versions of entire composite
  • 1.738 lines changed: 108, context: html, text, full: html, text
    Added 8 submissions worth for Yale (used new encodePatchTdb)