tdreszer: changes by commit

branch to review (2010-01-05 to 2010-01-12) v223

• Added 4 antibodies for Snyder lab
  • src/hg/encode/encodeValidate/config/cv.ra 1.172 - lines changed: 48, context: html, text, full: html, text
• Added 8 submissions worth for Yale (used new encodePatchTdb)
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.738 - lines changed: 108, context: html, text, full: html, text
• Big change to Open Chromatin, due to adding 77 tracks for Jan 2010 freeze. Made alpha and beta versions of entire composite
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.740 - lines changed: 3184, context: html, text, full: html, text
• Reorganized Open Chromatin and Duke Affy Exon
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.743 - lines changed: 145, context: html, text, full: html, text
• Cleaned up some extra tags in Open Chromatin
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.744 - lines changed: 338, context: html, text, full: html, text
• Removed restrictionEnzyme 'None'. This should be done by controlled vocab
  • src/hg/encode/encodeValidate/config/cv.ra 1.174 - lines changed: 5, context: html, text, full: html, text
• restrictionEnzyme cv term should support control terms
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.211 - lines changed: 1, context: html, text, full: html, text
• Added 5 new cells (3 provisional), 1 new antibody and 1 new treatment
  • src/hg/encode/encodeValidate/config/cv.ra 1.175 - lines changed: 91, context: html, text, full: html, text
• Changed name of treatment
  • src/hg/encode/encodeValidate/config/cv.ra 1.176 - lines changed: 1, context: html, text, full: html, text
• Added Rabbit_IgG for Snyder
  • src/hg/encode/encodeValidate/config/cv.ra 1.177 - lines changed: 6, context: html, text, full: html, text
• Insignificant change to UMass Uniqueness settings
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.748 - lines changed: 1, context: html, text, full: html, text
• Added 5 new (provisional) cell lines for Stam and 4 new antibodies for Snyder
  • src/hg/encode/encodeValidate/config/cv.ra 1.178 - lines changed: 119, context: html, text, full: html, text
• Inputs have replicates
  • src/hg/encode/DAFs/YDHChipSeqInput.daf 1.2 - lines changed: 3, context: html, text, full: html, text
• Missed GM12872 in earlier ci fo cells for Stam
  • src/hg/encode/encodeValidate/config/cv.ra 1.179 - lines changed: 14, context: html, text, full: html, text
• Change 10 cell lines from provisional to approved
  • src/hg/encode/encodeValidate/config/cv.ra 1.180 - lines changed: 20, context: html, text, full: html, text
• Added phase to ddf
  • src/hg/encode/encodeValidate/config/fields.ra 1.25 - lines changed: 5, context: html, text, full: html, text
• Added G1 phase for Stam lab
  • src/hg/encode/encodeValidate/config/cv.ra 1.181 - lines changed: 7, context: html, text, full: html, text