kuhn: changes by file

review to branch (2010-01-26 to 2010-02-02) v224

• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • 1.58 lines changed: 6, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.56 lines changed: 7, context: html, text, full: html, text
    reversed previous commit. not ready to do this and described it wrong
  • 1.55 lines changed: 7, context: html, text, full: html, text
    changed animal name to o_Organism for several
  • 1.54 lines changed: 7, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
  • 1.52 lines changed: 3, context: html, text, full: html, text
    moved all xenTro2 chains and nets to composite and dropped individual tracks
  • 1.51 lines changed: 5, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.598 lines changed: 25, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.597 lines changed: 25, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
  • 1.596 lines changed: 27, context: html, text, full: html, text
    moved all xenTro2 chains and nets to composite and dropped individual tracks
  • 1.595 lines changed: 27, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/chicken/galGal2/trackDb.chainNet.ra
  • 1.5 lines changed: 3, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/chicken/galGal2/trackDb.ra
  • 1.76 lines changed: 3, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/chimp/trackDb.ra
  • 1.30 lines changed: 14, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/chimp/panTro1/trackDb.chainNet.ra
  • 1.3 lines changed: 2, context: html, text, full: html, text
    changed animal name to o_Organism for several
• src/hg/makeDb/trackDb/cow/bosTau1/trackDb.ra
  • 1.19 lines changed: 8, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/cow/bosTau2/trackDb.chainNet.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.3 lines changed: 2, context: html, text, full: html, text
    changed animal name to o_Organism for several
• src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra
  • 1.15 lines changed: 1, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/dog/trackDb.ra
  • 1.39 lines changed: 11, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.38 lines changed: 6, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.chainNet.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.3 lines changed: 5, context: html, text, full: html, text
    changed animal name to o_Organism for several
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.ra
  • 1.39 lines changed: 8, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/elephant/trackDb.chainNet.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/human/omimGene.html
  • 1.23 lines changed: 42, context: html, text, full: html, text
    moved diclaimer to top of description section
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.502 lines changed: 8, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.501 lines changed: 13, context: html, text, full: html, text
    moved all xenTro2 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/human/hg16/trackDb.chainNet.ra
  • 1.6 lines changed: 6, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.5 lines changed: 3, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
  • 1.4 lines changed: 3, context: html, text, full: html, text
    changed animal name to o_Organism for several
• src/hg/makeDb/trackDb/human/hg16/trackDb.ra
  • 1.584 lines changed: 8, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra
  • 1.16 lines changed: 6, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.13 lines changed: 4, context: html, text, full: html, text
    changed some explicit animal names to 0_Organism, including chainNetXenTro1 which shold not have said Tetraodon in the first place
• src/hg/makeDb/trackDb/human/hg17/trackDb.ra
  • 1.444 lines changed: 8, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.443 lines changed: 6, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
  • 1.441 lines changed: 22, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra
  • 1.13 lines changed: 3, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.10 lines changed: 3, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.458 lines changed: 8, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra
  • 1.29 lines changed: 4, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • 1.191 lines changed: 9, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra
  • 1.10 lines changed: 6, context: html, text, full: html, text
    changed some explicit animal names to o_Organism, including chainNetXenTro1 which should not have said Tetraodon in the first place
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra
  • 1.10 lines changed: 3, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/opossum/trackDb.ra
  • 1.44 lines changed: 6, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/opossum/monDom1/trackDb.chainNet.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.3 lines changed: 4, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
  • 1.2 lines changed: 1, context: html, text, full: html, text
    changed animal name to o_Organism for several
• src/hg/makeDb/trackDb/opossum/monDom1/trackDb.ra
  • 1.26 lines changed: 6, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra
  • 1.30 lines changed: 10, context: html, text, full: html, text
    moved all xenTro2 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/rabbit/trackDb.chainNet.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra
  • 1.18 lines changed: 1, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/rat/trackDb.ra
  • 1.72 lines changed: 10, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.71 lines changed: 12, context: html, text, full: html, text
    moved all xenTro2 chains and nets to composite and dropped individual tracks
  • 1.70 lines changed: 10, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/rat/rn3/trackDb.chainNet.ra
  • 1.4 lines changed: 7, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
  • 1.52 lines changed: 22, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.51 lines changed: 24, context: html, text, full: html, text
    moved all xenTro2 chains and nets to composite and dropped individual tracks
  • 1.50 lines changed: 22, context: html, text, full: html, text
    moved all xenTro1 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra
  • 1.10 lines changed: 1, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
  • 1.9 lines changed: 1, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/tetraodon/trackDb.ra
  • 1.50 lines changed: 9, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra
  • 1.9 lines changed: 1, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.ra
  • 1.43 lines changed: 8, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra
  • 1.13 lines changed: 1, context: html, text, full: html, text
    moved all mm7 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/zebrafish/trackDb.ra
  • 1.66 lines changed: 9, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
  • 1.65 lines changed: 28, context: html, text, full: html, text
    moved all xenTro2 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/zebrafish/danRer2/trackDb.ra
  • 1.36 lines changed: 17, context: html, text, full: html, text
    moved all mm6 chains and nets to composite and dropped individual tracks
• src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.chainNet.ra
  • 1.4 lines changed: 3, context: html, text, full: html, text
    changed animal name to o_Organism for several
• src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.chainNet.ra
  • 1.4 lines changed: 2, context: html, text, full: html, text
    changed animal name to o_Organism for several
• src/utils/qa/countPerChrom.csh
  • 1.17 lines changed: 1, context: html, text, full: html, text
    reversed previous change. the hap chrom breaks the histogram if two assemblies have different hap sets. fix is too complicated for right now
  • 1.16 lines changed: 1, context: html, text, full: html, text
    added back the haplotype chroms at ann's request
• src/utils/qa/graph.csh
  • 1.4 lines changed: 5, context: html, text, full: html, text
    added support for datasets where the largest data value is smaller than the width of graph. graph then shrinks to width of largest value