larrym: changes by file

review to branch (2010-01-26 to 2010-02-02) v224

• src/hg/hgTracks/searchTracks.c
  • 1.1 lines changed: 0, context: html, text, full: html, text
    very rough prototype for search tracks
• src/hg/utils/automation/HgDb.pm
  • 1.8 lines changed: 4, context: html, text, full: html, text
    support PROFILE option
• src/hg/utils/mutationClassifier/makefile
  • 1.1 lines changed: 0, context: html, text, full: html, text
    first pass; currently only handles coding SNPs; still working on how to output mutation classifications
• src/hg/utils/mutationClassifier/mutationClassifier.c
  • 1.3 lines changed: 11, context: html, text, full: html, text
    remove some cruft in SPLICE_SITE code
  • 1.2 lines changed: 94, context: html, text, full: html, text
    use more and longer codes; start working on supporting indels; still not quite done
  • 1.1 lines changed: 107, context: html, text, full: html, text
    first pass; currently only handles coding SNPs; still working on how to output mutation classifications
• src/hg/utils/mutationClassifier/test/test.bed
  • 1.1 lines changed: 0, context: html, text, full: html, text
    first pass; currently only handles coding SNPs; still working on how to output mutation classifications