larrym: changes by commit

review to branch (2010-01-26 to 2010-02-02) v224

• first pass; currently only handles coding SNPs; still working on how to output mutation classifications
  • src/hg/utils/mutationClassifier/makefile 1.1 - lines changed: 0, context: html, text, full: html, text
  • src/hg/utils/mutationClassifier/mutationClassifier.c 1.1 - lines changed: 107, context: html, text, full: html, text
  • src/hg/utils/mutationClassifier/test/test.bed 1.1 - lines changed: 0, context: html, text, full: html, text
• very rough prototype for search tracks
  • src/hg/hgTracks/searchTracks.c 1.1 - lines changed: 0, context: html, text, full: html, text
• use more and longer codes; start working on supporting indels; still not quite done
  • src/hg/utils/mutationClassifier/mutationClassifier.c 1.2 - lines changed: 94, context: html, text, full: html, text
• remove some cruft in SPLICE_SITE code
  • src/hg/utils/mutationClassifier/mutationClassifier.c 1.3 - lines changed: 11, context: html, text, full: html, text
• support PROFILE option
  • src/hg/utils/automation/HgDb.pm 1.8 - lines changed: 4, context: html, text, full: html, text