tdreszer: changes by commit

review to branch (2010-01-26 to 2010-02-02) v224

• Fixed HepG2/SREBP1 to HepG2/SREBP1/pravastatin for Yale
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.836 - lines changed: 9, context: html, text, full: html, text
• Fixed a number of experiments which should have hade Rabbit_IgG protocol declared for Yale
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.837 - lines changed: 47, context: html, text, full: html, text
• Added treatments to long labels of HAIB TFSB
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.838 - lines changed: 39, context: html, text, full: html, text
• Added minGrayLevel to HAIB TFSB preaks, since they have scores below 100.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.839 - lines changed: 1, context: html, text, full: html, text
• minGrayLevel is for narrowPeaks too
  • src/hg/makeDb/trackDb/tagTypes.tab 1.9 - lines changed: 1, context: html, text, full: html, text
• Changed Mouse_IgG to IgG-mus and Rabbit_IgG to IgG-rab
  • src/hg/encode/encodeValidate/config/cv.ra 1.201 - lines changed: 12, context: html, text, full: html, text
• Rearranged a lot of Yale metadata
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.842 - lines changed: 356, context: html, text, full: html, text
• Show subId in metadata and hide antibody if it is really input.
  • src/hg/lib/hui.c 1.255 - lines changed: 9, context: html, text, full: html, text
• Altered sort order. take only last matching line of metadata from fileDb.ra. Don't show antibody if its eq input
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.25 - lines changed: 10, context: html, text, full: html, text
• Re-pair 11 Yale experiments from IgG-rab to IgG-mus (temporary pairing)
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.845 - lines changed: 46, context: html, text, full: html, text
• Removed 2 nonexistant tracks and revoked the 3 HUVECs for YDH
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.846 - lines changed: 84, context: html, text, full: html, text
• Clean up of old crud. UW ChIP to UW Histone. Revoke 1 more for YDH
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.850 - lines changed: 1566, context: html, text, full: html, text
• Fix for mapability sort order
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.851 - lines changed: 11, context: html, text, full: html, text
• Added abbreviations to cell line titles in matrix for UW DNase.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.852 - lines changed: 1, context: html, text, full: html, text
• Minor adjustments to cell descriptions and officially added UCDavis as control type. This had been implied for some time.
  • src/hg/encode/encodeValidate/config/cv.ra 1.203 - lines changed: 22, context: html, text, full: html, text
• Changes to speed up matrix buttons
  • src/hg/js/hui.js 1.48 - lines changed: 9, context: html, text, full: html, text
• Versioned a lot of Open Chromating Peaks and did some reorganization of the deck chairs
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.857 - lines changed: 3534, context: html, text, full: html, text
• Neglected 4 state subCBs in last check in
  • src/hg/js/hui.js 1.49 - lines changed: 7, context: html, text, full: html, text
• Add rank as separate from replicate to UW
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.859 - lines changed: 1701, context: html, text, full: html, text