tdreszer: changes by commit

branch to review (2010-02-02 to 2010-02-10) v225

• Fixed the warnbox to make hidden 'OK' not be picked up by select all.
  • src/lib/htmshell.c 1.65 - lines changed: 5, context: html, text, full: html, text
• Added some timing routines to help focus on selfish, inefficient code
  • src/hg/js/utils.js 1.27 - lines changed: 14, context: html, text, full: html, text
• Needed to rewrite the 2way CB routines. Now called fourWay
  • src/inc/cheapcgi.h 1.71 - lines changed: 7, context: html, text, full: html, text
  • src/lib/cheapcgi.c 1.131 - lines changed: 30, context: html, text, full: html, text
• Big changes to move matrix CB normalizeAll code from js to C. These changes should make the large composites less sluggish
  • src/hg/js/hui.js 1.50 - lines changed: 38, context: html, text, full: html, text
  • src/hg/lib/hui.c 1.259 - lines changed: 349, context: html, text, full: html, text
• Changes that I have been sitting on awhile. More info on unexpected errors. Fixes to dragReorder. Support for simpler navigation links.
  • src/hg/hgTracks/config.c 1.89 - lines changed: 19, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c 1.1622 - lines changed: 72, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h 1.199 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c 1.21 - lines changed: 200, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.h 1.13 - lines changed: 3, context: html, text, full: html, text
• Standardized metadata to 'antibody=Input'.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.865 - lines changed: 65, context: html, text, full: html, text
• Added file count at end of html page, by QA request.
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.26 - lines changed: 4, context: html, text, full: html, text
• Safegaurds against empty tracks which can legitimately happen when there is no centerLabel
  • src/hg/hgTracks/imageV2.c 1.22 - lines changed: 45, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.h 1.14 - lines changed: 4, context: html, text, full: html, text
• Show sex for cells
  • src/hg/encode/hgEncodeVocab/hgEncodeVocab.c 1.30 - lines changed: 3, context: html, text, full: html, text
• Three cell lines for Crawford's group are no longer provisional.
  • src/hg/encode/encodeValidate/config/cv.ra 1.207 - lines changed: 6, context: html, text, full: html, text
• Marking prostate cell line as provisional since we have no approved protocol
  • src/hg/encode/encodeValidate/config/cv.ra 1.208 - lines changed: 1, context: html, text, full: html, text
• Made protocols more specific to groups. This is the only identification of a cell line to a praticular group
  • src/hg/encode/encodeValidate/config/cv.ra 1.209 - lines changed: 101, context: html, text, full: html, text
• More protocol naming adjustments
  • src/hg/encode/encodeValidate/config/cv.ra 1.210 - lines changed: 48, context: html, text, full: html, text
• And one more time
  • src/hg/encode/encodeValidate/config/cv.ra 1.211 - lines changed: 4, context: html, text, full: html, text