braney: changes by file

branch to review (2010-02-16 to 2010-02-23) v226

• src/hg/hgTables/pal.c
  • 1.16 lines changed: 1, context: html, text, full: html, text
    take out cartSaveSession which ends up swallowing our output
• src/hg/hgc/hgc.c
  • 1.1599 lines changed: 1, context: html, text, full: html, text
    fix link to ENSEMBL
  • 1.1598 lines changed: 2, context: html, text, full: html, text
    take out some periods (per Ann)
• src/hg/lib/hui.c
  • 1.262 lines changed: 2, context: html, text, full: html, text
    fiddle with the wiggle dialog a little to get the YLineOff drop down in the right place
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • 1.63 lines changed: 9, context: html, text, full: html, text
    do some release tag checking
  • 1.62 lines changed: 21, context: html, text, full: html, text
    fix the code to check that subGroups have the predefined attributes from the composite. This got broken in Jim's trackDb overhaul.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.877 lines changed: 661, context: html, text, full: html, text
    extract RikenCage to include files
  • 1.869 lines changed: 39, context: html, text, full: html, text
    splitting Orchid and Chai tracks into two separate entities
  • 1.868 lines changed: 5, context: html, text, full: html, text
    keep using wgEncodeSangerGencode
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.alpha.ra
  • 1.2 lines changed: 133, context: html, text, full: html, text
    add insertLength variables for those tracks who didn't specify it
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.beta.ra
  • 1.2 lines changed: 7, context: html, text, full: html, text
    take out insertLength which isn't in release1
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.alpha.ra
  • 1.1 lines changed: 699, context: html, text, full: html, text
    extract RikenCage track to its own include
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.beta.ra
  • 1.1 lines changed: 699, context: html, text, full: html, text
    extract RikenCage track to its own include
• src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
  • 1.14 lines changed: 87, context: html, text, full: html, text
    replaced with human/wgEncodeGencode.html
• src/hg/makeDb/trackDb/zebrafish/trackDb.ra
  • 1.75 lines changed: 4, context: html, text, full: html, text
    add release alpha and beta to subTracks