braney: changes by commit

branch to review (2010-02-16 to 2010-02-23) v226

• fix the code to check that subGroups have the predefined attributes from the composite. This got broken in Jim's trackDb overhaul.
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c 1.62 - lines changed: 21, context: html, text, full: html, text
• add insertLength variables for those tracks who didn't specify it
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.alpha.ra 1.2 - lines changed: 133, context: html, text, full: html, text
• take out insertLength which isn't in release1
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.beta.ra 1.2 - lines changed: 7, context: html, text, full: html, text
• add release alpha and beta to subTracks
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.75 - lines changed: 4, context: html, text, full: html, text
• do some release tag checking
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c 1.63 - lines changed: 9, context: html, text, full: html, text
• take out some periods (per Ann)
  • src/hg/hgc/hgc.c 1.1598 - lines changed: 2, context: html, text, full: html, text
• keep using wgEncodeSangerGencode
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.868 - lines changed: 5, context: html, text, full: html, text
• fix link to ENSEMBL
  • src/hg/hgc/hgc.c 1.1599 - lines changed: 1, context: html, text, full: html, text
• splitting Orchid and Chai tracks into two separate entities
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.869 - lines changed: 39, context: html, text, full: html, text
• replaced with human/wgEncodeGencode.html
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html 1.14 - lines changed: 87, context: html, text, full: html, text
• take out cartSaveSession which ends up swallowing our output
  • src/hg/hgTables/pal.c 1.16 - lines changed: 1, context: html, text, full: html, text
• fiddle with the wiggle dialog a little to get the YLineOff drop down in the right place
  • src/hg/lib/hui.c 1.262 - lines changed: 2, context: html, text, full: html, text
• extract RikenCage track to its own include
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.alpha.ra 1.1 - lines changed: 699, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.beta.ra 1.1 - lines changed: 699, context: html, text, full: html, text
• extract RikenCage to include files
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.877 - lines changed: 661, context: html, text, full: html, text