kate: changes by file

review to branch (2010-03-16 to 2010-03-23) v227

• src/hg/encode/DAFs/2.0/broadChipSeq.daf
  • 1.2 lines changed: 41, context: html, text, full: html, text
    Consistency in layout
• src/hg/encode/DAFs/2.0/haibMethylRrbs.daf
  • 1.1 lines changed: 26, context: html, text, full: html, text
    
• src/hg/encode/encodeValidate/config/fields.ra
  • 1.28 lines changed: 10, context: html, text, full: html, text
    Add support for DAF dataAgreementSuffix field
• src/hg/encode/encodeValidate/test/expected/chipseq/README.txt
  • 1.8 lines changed: 5, context: html, text, full: html, text
    Restoring input files for chipseq test (removed due to excessive size?) and adjusting output to match
• src/hg/encode/encodeValidate/test/expected/chipseq/load.ra
  • 1.8 lines changed: 9, context: html, text, full: html, text
    Restoring input files for chipseq test (removed due to excessive size?) and adjusting output to match
• src/hg/encode/encodeValidate/test/expected/chipseq/trackDb.ra
  • 1.11 lines changed: 14, context: html, text, full: html, text
    Restoring input files for chipseq test (removed due to excessive size?) and adjusting output to match
• src/hg/encode/encodeValidate/test/input/chipseq/FoxP2_SL167.align_25.hg18.1.txt.BED
  • 1.1 lines changed: 49, context: html, text, full: html, text
    Restoring input files for chipseq test (removed due to excessive size?) and adjusting output to match
• src/hg/encode/encodeValidate/test/input/chipseq/FoxP2_SL167.align_25.hg18.2.txt.BED
  • 1.1 lines changed: 51, context: html, text, full: html, text
    Restoring input files for chipseq test (removed due to excessive size?) and adjusting output to match
• src/hg/encode/encodeValidate/test/input/chipseq/SL_167_peak_caller.ChIP.peaks
  • 1.1 lines changed: 99, context: html, text, full: html, text
    Restoring input files for chipseq test (removed due to excessive size?) and adjusting output to match
• src/hg/encode/encodeValidate/test/input/chipseq/StanfordChip-Test-Jun08.DDF
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Restoring input files for chipseq test (removed due to excessive size?) and adjusting output to match
• src/hg/encode/encodeValidate/test/input/chipseq/StanfordChip.DAF
  • 1.11 lines changed: 2, context: html, text, full: html, text
    Restoring input files for chipseq test (removed due to excessive size?) and adjusting output to match
• src/hg/hgGateway/hgGateway.c
  • 1.116 lines changed: 3, context: html, text, full: html, text
    Generalize survey link
• src/hg/hgTracks/hgTracks.c
  • 1.1635 lines changed: 3, context: html, text, full: html, text
    Generalize survey link
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.924 lines changed: 12, context: html, text, full: html, text
    Remove restriction timestamps from ENCODE Mapability as data restriction has been explicitly waiived by the labs (not part of the main production effort).
• src/hg/utils/automation/Encode.pm
  • 1.59 lines changed: 3, context: html, text, full: html, text
    Add support for DAF dataAgreementSuffix field