pchan: changes by file

review to branch (2010-03-16 to 2010-03-23) v227

• src/hg/archaeStuff/data/precomputed-tracks.tab
  • 1.7 lines changed: 4, context: html, text, full: html, text
    add Vogel's transcriptome tracks to H. pylori
• src/hg/archaeStuff/scripts/make-browser-2.0
  • 1.54 lines changed: 10, context: html, text, full: html, text
    add self homolog track
  • 1.53 lines changed: 5, context: html, text, full: html, text
    add genetree function
• src/hg/archaeStuff/scripts/archaeBrowser/Blast.pm
  • 1.29 lines changed: 1, context: html, text, full: html, text
    add self homolog track
  • 1.28 lines changed: 2, context: html, text, full: html, text
    change blastx cutoff
• src/hg/archaeStuff/scripts/archaeBrowser/Organism.pm
  • 1.12 lines changed: 15, context: html, text, full: html, text
    add genetree function
• src/hg/archaeStuff/scripts/archaeBrowser/Phylo.pm
  • 1.5 lines changed: 192, context: html, text, full: html, text
    add self homolog track
  • 1.4 lines changed: 1, context: html, text, full: html, text
    use genePred.tab to get gene count instead of da
  • 1.3 lines changed: 1, context: html, text, full: html, text
    fix remove temp file problem
  • 1.2 lines changed: 81, context: html, text, full: html, text
    change dos LF to unix LF
  • 1.1 lines changed: 331, context: html, text, full: html, text
    add genetree function
• src/hg/hgc/lowelab.c
  • 1.47 lines changed: 219, context: html, text, full: html, text
    add selfHomologs track
  • 1.46 lines changed: 38, context: html, text, full: html, text
    rearrange refseq detail page section order
  • 1.45 lines changed: 243, context: html, text, full: html, text
    rework refseq track detail page; add gene tree
• src/hg/inc/geneTree.h
  • 1.1 lines changed: 62, context: html, text, full: html, text
    add geneTree table
• src/hg/lib/geneTree.as
  • 1.1 lines changed: 6, context: html, text, full: html, text
    add geneTree table
• src/hg/lib/geneTree.c
  • 1.1 lines changed: 124, context: html, text, full: html, text
    add geneTree table
• src/hg/lib/geneTree.sql
  • 1.1 lines changed: 12, context: html, text, full: html, text
    add geneTree table
• src/hg/lib/makefile
  • 1.405 lines changed: 1, context: html, text, full: html, text
    add geneTree.c for creating gene tree