pchan: changes by commit

review to branch (2010-03-16 to 2010-03-23) v227

• add Vogel's transcriptome tracks to H. pylori
  • src/hg/archaeStuff/data/precomputed-tracks.tab 1.7 - lines changed: 4, context: html, text, full: html, text
• change blastx cutoff
  • src/hg/archaeStuff/scripts/archaeBrowser/Blast.pm 1.28 - lines changed: 2, context: html, text, full: html, text
• add genetree function
  • src/hg/archaeStuff/scripts/archaeBrowser/Organism.pm 1.12 - lines changed: 15, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/Phylo.pm 1.1 - lines changed: 331, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/make-browser-2.0 1.53 - lines changed: 5, context: html, text, full: html, text
• add geneTree table
  • src/hg/inc/geneTree.h 1.1 - lines changed: 62, context: html, text, full: html, text
  • src/hg/lib/geneTree.as 1.1 - lines changed: 6, context: html, text, full: html, text
  • src/hg/lib/geneTree.c 1.1 - lines changed: 124, context: html, text, full: html, text
  • src/hg/lib/geneTree.sql 1.1 - lines changed: 12, context: html, text, full: html, text
• add geneTree.c for creating gene tree
  • src/hg/lib/makefile 1.405 - lines changed: 1, context: html, text, full: html, text
• rework refseq track detail page; add gene tree
  • src/hg/hgc/lowelab.c 1.45 - lines changed: 243, context: html, text, full: html, text
• rearrange refseq detail page section order
  • src/hg/hgc/lowelab.c 1.46 - lines changed: 38, context: html, text, full: html, text
• change dos LF to unix LF
  • src/hg/archaeStuff/scripts/archaeBrowser/Phylo.pm 1.2 - lines changed: 81, context: html, text, full: html, text
• fix remove temp file problem
  • src/hg/archaeStuff/scripts/archaeBrowser/Phylo.pm 1.3 - lines changed: 1, context: html, text, full: html, text
• use genePred.tab to get gene count instead of da
  • src/hg/archaeStuff/scripts/archaeBrowser/Phylo.pm 1.4 - lines changed: 1, context: html, text, full: html, text
• add self homolog track
  • src/hg/archaeStuff/scripts/archaeBrowser/Blast.pm 1.29 - lines changed: 1, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/Phylo.pm 1.5 - lines changed: 192, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/make-browser-2.0 1.54 - lines changed: 10, context: html, text, full: html, text
• add selfHomologs track
  • src/hg/hgc/lowelab.c 1.47 - lines changed: 219, context: html, text, full: html, text