ann: changes by file

branch to review (2010-03-02 to 2010-03-16) v227

• src/hg/hgCustom/hgCustom.c
  • 1.139 lines changed: 1, context: html, text, full: html, text
    added BAM to the list of formats that need an embedded URL.
• src/hg/makeDb/genbank/etc/rr.dbs
  • 1.87 lines changed: 2, context: html, text, full: html, text
    turning on genbank updates for both aplCal1 and tetNig2
• src/hg/makeDb/trackDb/blatFr1.html
  • 1.8 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/chainNet.html
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • 1.86 lines changed: 226, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.623 lines changed: 18, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/trackDb.ra
  • 1.12 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/borEut13/trackDb.ra
  • 1.10 lines changed: 7, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/canHg10/trackDb.ra
  • 1.11 lines changed: 4, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/canHg11/trackDb.ra
  • 1.6 lines changed: 4, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/canHg12/trackDb.ra
  • 1.8 lines changed: 7, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/canHg4/trackDb.ra
  • 1.13 lines changed: 4, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/canHg9/trackDb.ra
  • 1.8 lines changed: 4, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/car46/trackDb.ra
  • 1.10 lines changed: 4, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/catArr1/trackDb.ra
  • 1.7 lines changed: 10, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/euaGli13/trackDb.ra
  • 1.6 lines changed: 10, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/gliRes13/trackDb.ra
  • 1.6 lines changed: 10, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/homIni13/trackDb.ra
  • 1.9 lines changed: 12, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/homIni14/trackDb.ra
  • 1.8 lines changed: 8, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/homIni20/trackDb.ra
  • 1.6 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/homPan20/trackDb.ra
  • 1.6 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/priMat13/trackDb.ra
  • 1.8 lines changed: 10, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/ancestor/rodEnt13/trackDb.ra
  • 1.6 lines changed: 10, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/anopheles/trackDb.ra
  • 1.20 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/apis/trackDb.ra
  • 1.16 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/apis/apiMel2/trackDb.ra
  • 1.28 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/cat/trackDb.ra
  • 1.15 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/chicken/galGal1/trackDb.ra
  • 1.16 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/chicken/galGal2/trackDb.ra
  • 1.79 lines changed: 6, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/chimp/panTro1/trackDb.ra
  • 1.41 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra
  • 1.55 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.ra
  • 1.41 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/trackDb.ra
  • 1.88 lines changed: 37, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/dm1/trackDb.ra
  • 1.63 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra
  • 1.63 lines changed: 7, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/dm3/trackDb.ra
  • 1.16 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/dp1/trackDb.ra
  • 1.17 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/dp2/trackDb.ra
  • 1.13 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/dp3/trackDb.ra
  • 1.17 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droAna1/trackDb.ra
  • 1.16 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droEre1/trackDb.ra
  • 1.14 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droGri1/trackDb.ra
  • 1.9 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droMoj1/trackDb.ra
  • 1.15 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droMoj2/trackDb.ra
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droSim1/trackDb.ra
  • 1.20 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droVir1/trackDb.ra
  • 1.15 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droVir2/trackDb.ra
  • 1.7 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droYak1/trackDb.ra
  • 1.18 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/drosophila/droYak2/trackDb.ra
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/fugu/trackDb.ra
  • 1.81 lines changed: 7, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.526 lines changed: 23, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/human/hg10/trackDb.ra
  • 1.7 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/human/hg12/trackDb.ra
  • 1.18 lines changed: 6, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/human/hg13/trackDb.ra
  • 1.49 lines changed: 8, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/human/hg15/trackDb.ra
  • 1.87 lines changed: 17, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/human/hg16/trackDb.ra
  • 1.590 lines changed: 31, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/human/hg17/trackDb.ra
  • 1.457 lines changed: 31, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.475 lines changed: 15, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.html
  • 1.22 lines changed: 7, context: html, text, full: html, text
    trying to clear this up
• src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
  • 1.16 lines changed: 2, context: html, text, full: html, text
    trying to clarify the release name of this batch
• src/hg/makeDb/trackDb/human/hg19/pgSnp.html
  • 1.3 lines changed: 1, context: html, text, full: html, text
    added missing closing A tag
• src/hg/makeDb/trackDb/human/hg19/trackDb.chainNet.ra
  • 1.4 lines changed: 1, context: html, text, full: html, text
    swapping tetNig1 c/n for tetNig2 c/n.
  • 1.3 lines changed: 1, context: html, text, full: html, text
    reverting Hiram's change. It would have caused tetNig1 chains and nets on the RR to switch from 'Tetraodon' to 'tetNig1'.
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.104 lines changed: 88, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
  • 1.103 lines changed: 6, context: html, text, full: html, text
    swapping tetNig1 c/n for tetNig2 c/n.
  • 1.101 lines changed: 6, context: html, text, full: html, text
    backing out Hiram's last change. Mary noticed that if this trackDb was pushed to the RR before the tetNig chain/net tables are released, then the tetNig1 chainNet track would go away.
• src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra
  • 1.11 lines changed: 1, context: html, text, full: html, text
    this is the only way we could get oryLat1 and 2 to place nicely with the new tetNig2 c/n shortLabels.
• src/hg/makeDb/trackDb/medaka/oryLat1/trackDb.chainNet.ra
  • 1.2 lines changed: 9, context: html, text, full: html, text
    this is the only way we could get oryLat1 and 2 to place nicely with the new tetNig2 c/n shortLabels.
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • 1.210 lines changed: 6, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/mouse/mm2/trackDb.ra
  • 1.21 lines changed: 5, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/mouse/mm2X/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/mouse/mm3/trackDb.ra
  • 1.43 lines changed: 12, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/mouse/mm3X/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/mouse/mm4/trackDb.ra
  • 1.29 lines changed: 9, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/mouse/mm5/trackDb.ra
  • 1.54 lines changed: 11, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra
  • 1.68 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra
  • 1.69 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.chainNet.ra
  • 1.10 lines changed: 3, context: html, text, full: html, text
    overriding old tetNig1 c/n
• src/hg/makeDb/trackDb/opossum/trackDb.ra
  • 1.55 lines changed: 6, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/rat/rn2/trackDb.ra
  • 1.9 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/rat/rn3/trackDb.ra
  • 1.68 lines changed: 22, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/rat/rn5/trackDb.ra
  • 1.5 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/rhesus/trackDb.ra
  • 1.24 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/squirt/ci1/trackDb.ra
  • 1.53 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/squirt/ci2/trackDb.ra
  • 1.10 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/squirt/cioSav1/trackDb.ra
  • 1.6 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/squirt/cioSav2/trackDb.ra
  • 1.9 lines changed: 3, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra
  • 1.12 lines changed: 1, context: html, text, full: html, text
    overriding old tetNig1 c/n
• src/hg/makeDb/trackDb/tetraodon/trackDb.ra
  • 1.61 lines changed: 4, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/tetraodon/tetNig2/gap.html
  • 1.3 lines changed: 5, context: html, text, full: html, text
    moved sentence. added period.
• src/hg/makeDb/trackDb/worm/trackDb.ra
  • 1.44 lines changed: 28, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/worm/caeRem1/trackDb.ra
  • 1.3 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/worm/cb1/trackDb.ra
  • 1.23 lines changed: 4, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/worm/cb2/trackDb.ra
  • 1.6 lines changed: 4, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/worm/ce1/trackDb.ra
  • 1.41 lines changed: 6, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/worm/ce2/trackDb.ra
  • 1.38 lines changed: 7, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/worm/ce3/trackDb.ra
  • 1.11 lines changed: 4, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/worm/ce4/trackDb.ra
  • 1.43 lines changed: 2, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/zebrafish/trackDb.ra
  • 1.79 lines changed: 6, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/zebrafish/danRer1/trackDb.ra
  • 1.39 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/zebrafish/danRer2/trackDb.ra
  • 1.37 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.ra
  • 1.62 lines changed: 1, context: html, text, full: html, text
    Massive change of all instances of ($o_date/$o_db) to ($o_date). This is because there was a recent change to hgcentral.dbDb adding much more detail to the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by Angie.
• src/utils/qa/chain.csh
  • 1.29 lines changed: 1, context: html, text, full: html, text
    only for vertebrate assemblies.
  • 1.28 lines changed: 4, context: html, text, full: html, text
    added disclaimer about findLevel output since all chainNets now use top-level chainNet.html file
• src/utils/qa/checkOffend.csh
  • 1.12 lines changed: 1, context: html, text, full: html, text
    added error message for non-chrom-based tables
• src/utils/qa/net.csh
  • 1.24 lines changed: 1, context: html, text, full: html, text
    only for vertebrate assemblies.
  • 1.23 lines changed: 4, context: html, text, full: html, text
    added disclaimer about findLevel output since all chainNets now use top-level chainNet.html file
• src/utils/qa/qaEncodeTracks.csh
  • 1.9 lines changed: 2, context: html, text, full: html, text
    un-hard-coded hg18 from script